FMO11329.5prime Sequence
650 bp (650 high quality bases) assembled on 2011-12-09
> FMO11329.5prime
CAGTCGACATGCGTCTTCATTGTGATAGGATTTGTTCACTGGATCCTGGT
GCTAACCTTGCTGCACGAATGGTTTCTGGTCTTGGTAAACGAGCACTCAT
CTGCATTGCTCCTAGCCTTTGTATTTGGCATTTTCCTACTTTTCCTGTTT
GCCCTAAGTATGCCGCTAAGGAAAATGTCCTGTGTCAACTGGCTGATTAC
GTTTATTATCTTTCTCTCAGTGTGCTGATCATATCATCGGGAGTACTTTA
TATGCTTGCCGGATTTCTGATTGTCAGCCTTGCATTTGTGTTATGTACAC
TTATAGCTGCTTTAATGGCGTATGACCTCACAGGCACCGGACTCTACCTA
TATGCCCTTGCAACTGGCACTTACTCACTGAGCATATACTCCCTGGTATT
GTATGTGGTTCTCGACGTGATCTGGGGATTTTATCTCTTCGCATTCTGTA
TCGGCTGTGTGGTGATGATGTTCCTGATGTATCATGTGCAGTGCATCATG
GGCGGAAGAAGGGCCTCGACCAAGTTGTTCGATGACAAGTTCGCCGCCCT
GCTGCTGTTCCACGAGTTCATAGGCCTCTTTGTGCTAACCCTCTACTGGC
GGCCCATAATGCATCGCCTGCAGTTGAAACAAGCAAGCTTTCTAGACCAT
FMO11329.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32391-RB | 748 | CG32391-RB | 91..714 | 9..632 | 3120 | 100 | Plus |
| CG32391-RA | 751 | CG32391-RA | 91..717 | 9..632 | 2745 | 95.5 | Plus |
| CG14823-RA | 2098 | CG14823-RA | 880..1042 | 632..470 | 815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7068245..7068407 | 632..470 | 815 | 100 | Minus |
| 3L | 28110227 | 3L | 7068471..7068621 | 470..320 | 755 | 100 | Minus |
| 3L | 28110227 | 3L | 7068854..7068998 | 210..66 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 7068674..7068783 | 320..211 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 7069051..7069107 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:38:22 has no hits.
FMO11329.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:48 Download gff for
FMO11329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32391-RB | 87..717 | 2..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:49 Download gff for
FMO11329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32391-RB | 87..717 | 2..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:59 Download gff for
FMO11329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32391-RB | 87..717 | 2..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:59 Download gff for
FMO11329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7068241..7068406 | 471..636 | 98 | <- | Minus |
| 3L | 7068471..7068620 | 321..470 | 100 | <- | Minus |
| 3L | 7068674..7068783 | 211..320 | 100 | <- | Minus |
| 3L | 7068854..7068998 | 66..210 | 100 | <- | Minus |
| 3L | 7069051..7069111 | 2..65 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:49 Download gff for
FMO11329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7061341..7061506 | 471..636 | 98 | <- | Minus |
| arm_3L | 7061571..7061720 | 321..470 | 100 | <- | Minus |
| arm_3L | 7061774..7061883 | 211..320 | 100 | <- | Minus |
| arm_3L | 7061954..7062098 | 66..210 | 100 | <- | Minus |
| arm_3L | 7062151..7062211 | 2..65 | 93 | | Minus |
