Clone FMO11333 Report

Search the DGRC for FMO11333

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:33
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15283-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11333.5prime Sequence

404 bp (404 high quality bases) assembled on 2011-12-09

> FMO11333.5prime
CAGTCGACATGATTAGATCCTGTCGAGCTCTGATCTCCCAGTGCGGATTA
CACCTAAGACGATGTTCTCTTGCAAAGGCAGCAAGTAATTTGAAAAAAGA
TGATGTCGAAGAAATGGAAACACCAGCGAATAGACAGAGGGTTGAGCTGC
CACCGAATCCCGAGGAAAAACTAAGTAAGCGCTATCTTGCGTTCCGGGAA
AAGCTGCGATCGGAGGCGCCGCTAGAACCACTGCCCGAGTGTGCACCACA
TCCGGCCCACGAAAAGGAGCCACTTAAACCGTGGCCCAATAATACCAATC
CGTATACCGGGGAAATCGGTGGACAAGCGGGACCAGAACCCACGCGCTAT
GGCGACTGGGAGCGCAAGGGACGAGTCACGGATTTCGCAAGCTTTCTAGA
CCAT

FMO11333.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15283-RB 641 CG15283-RB 63..440 9..386 1890 100 Plus
Sirup-RC 727 CG7224-RC 460..598 248..386 335 82.7 Plus
Sirup-RA 650 CG7224-RA 383..521 248..386 335 82.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14450483..14450860 386..9 1890 100 Minus
2L 23513712 2L 7999409..7999547 248..386 335 82.7 Plus
Blast to na_te.dros performed on 2014-11-27 00:43:38 has no hits.

FMO11333.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:20 Download gff for FMO11333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15283-RB 63..445 9..392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:27 Download gff for FMO11333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15283-RB 63..445 9..392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:44 Download gff for FMO11333.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15283-RB 63..445 9..392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:44 Download gff for FMO11333.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14450478..14450860 9..392 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:27 Download gff for FMO11333.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14450478..14450860 9..392 99   Minus