FMO11336.5prime Sequence
1082 bp (926 high quality bases) assembled on 2011-12-09
> FMO11336.5prime
CAGTCGACATGAAGGTGATCGCAGCCGTTTTGCTGTGCTTATTGATTATC
CGCACGGCCCATGGACAGTACGTGAGTTGCCGGAATCCCAACCAGCGGAC
TGGATATTGCGTGAACATCCCCTTGTGTGTGCCACTGAATTCCGTGCTGG
CGAAGAGTAATCCTACAGACTCCGAGATGCGGTTCATCCGAGAATCCCGT
TGCCTCGTATCTGACCAGAGCGATCTGCCATTCGTCTGCTGCACTCCGGA
TACGGACTACAACACGACGCGTGCTAGACCTAACGACGAAGTGATACATT
CCACTTTGCTTCCCGATCGGTCCATCTGTGGGGGCGATATAGCGTACAAC
CAGATCACGAAAGGCAACGAAACCGTTCTCACTGAATTCGCCTGGATGGT
GCTGTTAGAGTACCGTCCTCATGATGGACAACAATTGAGAACGTACTGCT
CGGGATCACTGATCAATAATCGATATGTTGTAACAGCGGCTCACTGCGTG
TCGGCTGCTACTAGGGCCCGCAAAGGAGATGTAGTCTCTGTGAGATTGGG
CGAGCATAACACCAGTGCCGTGGTGGATTGCCTCAATGGAAGGTGCCTAC
CGGAACCTGTGCAAATCGCGGTCGAGGAGATCCGCATACATGAAAGCTTC
GGTACCCGATTGTTTTGGAACGACATTGCTCTGATCCGTTTGGCGAGAGA
GGTTGCCTATTCGCCAGCATTCGACCTGTTTGCTTGCCCTCGACTGTGGG
TCTGCAAAACTGGCAATCCGGCCAGGCGTTTACCGTGCAGATGGGGTAGA
ACCCTCACCAGCGAAAGCAGTCCCGTCAAGATGAAATTGAGGGTACGTAC
GTGAGCTGTCTGTGTCGTCGCAGTATGCTAGCATAGTGGTCTGGGTGACT
CCACTTGTGCGCGAAGTAAAGTCTGGTGAAGCTGCATGGGGACTCGCGAC
CACTGATGCATCCACGAGGCGTTGGTCTTGGGCATGGTCTTGCTGACTGC
GCACGATTGCACTGTCAACAAGTTCTCTTAGACTGATCCCGAATCACGAT
CCTGCAGTCGTTCTATGATCCCGGCATCGGTC
FMO11336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11313-RC | 1213 | CG11313-RC | 20..1001 | 9..969 | 4320 | 97.4 | Plus |
| CG11313-RD | 1222 | CG11313-RD | 20..1010 | 9..969 | 4220 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30730569..30731031 | 532..70 | 2285 | 99.6 | Minus |
| 3R | 32079331 | 3R | 30730117..30730506 | 912..533 | 1445 | 96.2 | Minus |
| 3R | 32079331 | 3R | 30731086..30731146 | 69..9 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:43:11 has no hits.
FMO11336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:17 Download gff for
FMO11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11313-RB | 203..1145 | 1..929 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:11 Download gff for
FMO11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11313-RC | 12..954 | 1..929 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:27 Download gff for
FMO11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11313-RC | 12..954 | 1..929 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:27 Download gff for
FMO11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30730140..30730506 | 533..891 | 97 | <- | Minus |
| 3R | 30730569..30731031 | 70..532 | 99 | <- | Minus |
| 3R | 30731086..30731150 | 1..69 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:11 Download gff for
FMO11336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26555862..26556228 | 533..891 | 97 | <- | Minus |
| arm_3R | 26556291..26556753 | 70..532 | 99 | <- | Minus |
| arm_3R | 26556808..26556872 | 1..69 | 94 | | Minus |
