FMO11339.5prime Sequence
443 bp (443 high quality bases) assembled on 2011-12-09
> FMO11339.5prime
CAGTCGACATGCGATACTCCATGGCAATGATCCCGATTCTGGGCCTGCTG
CTCGTAGCACTGATCCACGCCGCTCCCGTTGAGGTCGTCTACACGGGCGA
AAGTTGCGCCTGTCCCACCCAACTGGGTTACCAGCTAAATGTGCCCAATA
CCCCAAAGCCAAAGAAGTATGTCGGTGGCGAGTACGGCTATCGGGTGGAG
AAGCCCGTCCAGACGAAAGCCAAGATTACCTACAGCTTTGACTTCACTGT
GGAGCAGCCGAGGACACCGGCGCCGCCCAAGAACAATCCCGCCAAGCTGT
ATGCCAAGGTGGACCGGATCACAGTCAACAAAGCGGATTGCCAGGCCAAG
AACAAGTCAACATGCGGCTGCTCGAGTTGCTCCGGCCAAAAACCCAGCTA
CGGCGAAGACGCGGGCTACGGCTACGCAAGCTTTCTAGACCAT
FMO11339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp7Fb-RB | 775 | CG15350-RB | 34..454 | 5..425 | 2090 | 99.8 | Plus |
| Cp7Fb-RA | 2093 | CG15350-RA | 34..431 | 5..402 | 1960 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8473870..8474201 | 5..336 | 1645 | 99.7 | Plus |
| X | 23542271 | X | 8474343..8474409 | 336..402 | 320 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:44:17 has no hits.
FMO11339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:24 Download gff for
FMO11339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp7Fb-RB | 661..1091 | 1..430 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:55 Download gff for
FMO11339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp7Fb-RB | 29..459 | 1..430 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:07 Download gff for
FMO11339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp7Fb-RB | 29..459 | 1..430 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:07 Download gff for
FMO11339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8473865..8474201 | 1..336 | 98 | -> | Plus |
| X | 8474344..8474404 | 337..397 | 100 | -> | Plus |
| X | 8475723..8475755 | 398..430 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:55 Download gff for
FMO11339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8367898..8368234 | 1..336 | 98 | -> | Plus |
| arm_X | 8368377..8368437 | 337..397 | 100 | -> | Plus |
| arm_X | 8369756..8369788 | 398..430 | 94 | | Plus |
