Clone FMO11340 Report

Search the DGRC for FMO11340

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:40
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31279-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11340.5prime Sequence

1128 bp (1004 high quality bases) assembled on 2011-12-09

> FMO11340.5prime
CAGTCGACATGTTACAATACCTGCTGGTTTGCTTCGTTCTACTCATCAGA
CGCCGCACCGACGGCAGCCTGTGTGCCACAAAGTTCATAGTGCGCGTGCC
TCGCGACAAGGACATTGGCTTGATCTTCGATCTGACCGTCACCAATCGCA
TCAGGAGTGACAAAAGGGAGACGCTGGACTTCAATGTCGTCTCGAATGGG
GAATGCACTGTGAACACGACCCATGGGGAGCAGGTGCACGCGATGGGAAG
GATCTTTGGCGGGGATTTTGGCTCCGTCGAACCGGGCAAGAGTGAAACTG
TCTCCCTGGTCTGGCCCACTGTGTCTCTGTACAACCGTGTGGGCAGCTGC
CCCATTCTAATCTCAGCCACAAGTGCCCACGCTACGGATGCAGTGGCAAC
CGCGAGGCAGGTGCTGCACTTTGACACCCGCTTTGAGACCCTGGATCCGC
ACGGCAACAAGCTGCGCCGGCGGAAGGATTACAAGGACTGTCGCAACTGG
GACAAGGATTACCTGCGCAACTGCACACCGCTGAACTGTGAGGAGCGTTA
CTTTGGGAAACGGAGCTTTTTCAATAGGGAAACGGAACAGTGCGAACCGG
TGACTGATTGCTCGGCCCCAGGCGAGTACTACGACATCTTCAGCAACGAG
CGCGTCGATCCTGGCAATTTCGTGTCCGAGGAGGAGCTGGACCTCATTAA
GCAAGGAAAGTTCGACTTTAATTTTTTGGATTTGCGGGGGCCACCATCGC
ATGAGCCGAAAGCCAACAAAGCGCTTCCTTACAAGAAAAAATACCAGGCC
AACAAGGCACTTTGTCCATTCCAAGCATGAGAAGTCAGATGATTGCGACA
TTTGCGTAAGCTAACCCTGGCCCGATTTAACGACTGCTTTCAGCATTTGC
AGGATGGTCAGTCCGAGCCGGTCGCAGTTGAACCCACAATCGAGAAGAAA
ATCAAGAAATGTCGCCATTTGAGGTGCCCATGCTACGCAGCTCTATTACG
ACTGGTATTCTTCCTTTAAAGGACCGATTGCTTGGGGGAGCCGAAAATCG
GTGCATAGTGATCCAGTTCCACAAATGTCTCTCATCCGGGAATCGAACCC
CCTGCACGTGGAATCCGCAAGCTGGATT

FMO11340.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31279-RE 1454 CG31279-RE 17..1139 9..1128 4980 97.2 Plus
CG31279-RD 1525 CG31279-RD 87..1209 9..1128 4980 97.2 Plus
CG31279-RC 1485 CG31279-RC 17..1139 9..1128 4980 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16431281..16431707 323..749 2135 100 Plus
3R 32079331 3R 16432117..16432407 749..1039 1050 95.2 Plus
3R 32079331 3R 16430997..16431191 129..323 975 100 Plus
3R 32079331 3R 16430821..16430941 9..129 605 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:44:23 has no hits.

FMO11340.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:24 Download gff for FMO11340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31279-RC 7..1018 1..1008 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:59 Download gff for FMO11340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31279-RC 7..1018 1..1008 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:10 Download gff for FMO11340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31279-RC 7..1018 1..1008 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:10 Download gff for FMO11340.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16430811..16430941 1..129 96 -> Plus
3R 16430998..16431191 130..323 100 -> Plus
3R 16431282..16431707 324..749 100 -> Plus
3R 16432118..16432430 750..1058 94 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:59 Download gff for FMO11340.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12256533..12256663 1..129 96 -> Plus
arm_3R 12256720..12256913 130..323 100 -> Plus
arm_3R 12257004..12257429 324..749 100 -> Plus
arm_3R 12257840..12258152 750..1058 94 -> Plus