FMO11340.5prime Sequence
1128 bp (1004 high quality bases) assembled on 2011-12-09
> FMO11340.5prime
CAGTCGACATGTTACAATACCTGCTGGTTTGCTTCGTTCTACTCATCAGA
CGCCGCACCGACGGCAGCCTGTGTGCCACAAAGTTCATAGTGCGCGTGCC
TCGCGACAAGGACATTGGCTTGATCTTCGATCTGACCGTCACCAATCGCA
TCAGGAGTGACAAAAGGGAGACGCTGGACTTCAATGTCGTCTCGAATGGG
GAATGCACTGTGAACACGACCCATGGGGAGCAGGTGCACGCGATGGGAAG
GATCTTTGGCGGGGATTTTGGCTCCGTCGAACCGGGCAAGAGTGAAACTG
TCTCCCTGGTCTGGCCCACTGTGTCTCTGTACAACCGTGTGGGCAGCTGC
CCCATTCTAATCTCAGCCACAAGTGCCCACGCTACGGATGCAGTGGCAAC
CGCGAGGCAGGTGCTGCACTTTGACACCCGCTTTGAGACCCTGGATCCGC
ACGGCAACAAGCTGCGCCGGCGGAAGGATTACAAGGACTGTCGCAACTGG
GACAAGGATTACCTGCGCAACTGCACACCGCTGAACTGTGAGGAGCGTTA
CTTTGGGAAACGGAGCTTTTTCAATAGGGAAACGGAACAGTGCGAACCGG
TGACTGATTGCTCGGCCCCAGGCGAGTACTACGACATCTTCAGCAACGAG
CGCGTCGATCCTGGCAATTTCGTGTCCGAGGAGGAGCTGGACCTCATTAA
GCAAGGAAAGTTCGACTTTAATTTTTTGGATTTGCGGGGGCCACCATCGC
ATGAGCCGAAAGCCAACAAAGCGCTTCCTTACAAGAAAAAATACCAGGCC
AACAAGGCACTTTGTCCATTCCAAGCATGAGAAGTCAGATGATTGCGACA
TTTGCGTAAGCTAACCCTGGCCCGATTTAACGACTGCTTTCAGCATTTGC
AGGATGGTCAGTCCGAGCCGGTCGCAGTTGAACCCACAATCGAGAAGAAA
ATCAAGAAATGTCGCCATTTGAGGTGCCCATGCTACGCAGCTCTATTACG
ACTGGTATTCTTCCTTTAAAGGACCGATTGCTTGGGGGAGCCGAAAATCG
GTGCATAGTGATCCAGTTCCACAAATGTCTCTCATCCGGGAATCGAACCC
CCTGCACGTGGAATCCGCAAGCTGGATT
FMO11340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31279-RE | 1454 | CG31279-RE | 17..1139 | 9..1128 | 4980 | 97.2 | Plus |
CG31279-RD | 1525 | CG31279-RD | 87..1209 | 9..1128 | 4980 | 97.2 | Plus |
CG31279-RC | 1485 | CG31279-RC | 17..1139 | 9..1128 | 4980 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16431281..16431707 | 323..749 | 2135 | 100 | Plus |
3R | 32079331 | 3R | 16432117..16432407 | 749..1039 | 1050 | 95.2 | Plus |
3R | 32079331 | 3R | 16430997..16431191 | 129..323 | 975 | 100 | Plus |
3R | 32079331 | 3R | 16430821..16430941 | 9..129 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:44:23 has no hits.
FMO11340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:24 Download gff for
FMO11340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31279-RC | 7..1018 | 1..1008 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:59 Download gff for
FMO11340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31279-RC | 7..1018 | 1..1008 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:10 Download gff for
FMO11340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31279-RC | 7..1018 | 1..1008 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:10 Download gff for
FMO11340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16430811..16430941 | 1..129 | 96 | -> | Plus |
3R | 16430998..16431191 | 130..323 | 100 | -> | Plus |
3R | 16431282..16431707 | 324..749 | 100 | -> | Plus |
3R | 16432118..16432430 | 750..1058 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:59 Download gff for
FMO11340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12256533..12256663 | 1..129 | 96 | -> | Plus |
arm_3R | 12256720..12256913 | 130..323 | 100 | -> | Plus |
arm_3R | 12257004..12257429 | 324..749 | 100 | -> | Plus |
arm_3R | 12257840..12258152 | 750..1058 | 94 | -> | Plus |