Clone FMO11341 Report

Search the DGRC for FMO11341

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:41
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15196-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11341.5prime Sequence

1047 bp (990 high quality bases) assembled on 2011-12-09

> FMO11341.5prime
CAGTCGACATGGCCCATACCATCAAGTTGGACTGGATTAGGAGGATCCTG
AATCTTTGCGGCTCTCGACAATGTCGCCTAATGCATGATGATGCTGAGGC
GCGGATCCGCACGCAGAGTCCCTGGAGACACCTGATGCGATTGACCAGGA
ATAACTCGAGCAGTACTTCCGGTGGCAATGAACCCCGCAGACAGGACCCA
AATAAACCGAAGCCGAATAGCAAGCAAATCTCATACACCGAACGGCAAAC
ACCTTTTAGGATCAACACACATCCAAATGCTTACCTAGTAGGTATGCATC
CTTTGGTCAGAGAGCGGGACAAAAGGACGAAGAGGCATAAGCGACGCCTT
CCATTTGAAAAGTCAGCAACATTGAGGTTACACAATGCGCAGCGAAGAGA
GGAGCAGCTGGCGAGGACCATGCTATCCCAGGATTGCAGTGGCCCTCACT
CATCCAGCCATACCGCCATACCGCTTAAGATTCTTCAAATGACGCAAAGG
GATCGTATGATGTCCTCGCAGCTGGTAATTGATGCGATGAGGACCAGGAA
TATGGAGAGAATGGTGCGCAAATCGGAGGCCAGGATGTTGAACGAGCGGG
TCAAGAAGCTCCTGGAGAAACAGAAAGAATCAAAGTTAGAAGGGAAGAAG
CAGCAGTCGGATGATGACTCCACTGTTCCCGATCCAAAGATCATGGGGCC
GGAACAGCGGCCACTGGAGGTCCAGGCGGTGGTGCAATTGCTAAAGAAAG
CCATTTCCCTGGTCCATTTCGGTCACGAGAATCCCCCGAAGGTGGTGAAG
GATGTAAGGATCTCCAGGATGCAGACCAAACTGGACATAGATGGCCTGCA
TCCTTGCGGCAGCTTCATTGAATTCTTTTGCCAACACTGACAGCCGCAGT
CAATCCAAAGCCTATCACATGCGCATTCGCTGCACCAAGAGTCCAATATC
GGAAATCCAATCAAATCCAACTCTCACAAATAGCCGTCAGTCTTGATGAT
GAAGAGCAAAGGCGCCTGGATCGATTGAAGAGCGAAAAAGGGTGCAA

FMO11341.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG15196-RB 1587 CG15196-RB 108..1145 9..1047 4885 98.5 Plus
CG15196-RC 1578 CG15196-RC 108..1136 9..1047 4740 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11410458..11411208 279..1028 3350 97.9 Plus
X 23542271 X 11410199..11410393 85..279 975 100 Plus
X 23542271 X 11410054..11410129 9..84 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:44:29 has no hits.

FMO11341.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:25 Download gff for FMO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15196-RB 99..1143 1..1045 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:03 Download gff for FMO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15196-RB 99..1143 1..1045 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:15 Download gff for FMO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15196-RB 99..1143 1..1045 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:15 Download gff for FMO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11410045..11410129 1..84 96 -> Plus
X 11410199..11410393 85..279 100 -> Plus
X 11410459..11411223 280..1045 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:03 Download gff for FMO11341.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11304078..11304162 1..84 96 -> Plus
arm_X 11304232..11304426 85..279 100 -> Plus
arm_X 11304492..11305256 280..1045 97   Plus