FMO11343.5prime Sequence
680 bp (680 high quality bases) assembled on 2011-12-09
> FMO11343.5prime
CAGTCGACATGAACGATGACGCCCGATCGCCGGGCGCTGGTAGTACTCCC
GGTCCACTGTCACAGCAGCCACCTGCCCTAGATACATCAGACCCTGATGG
ACGATGGTGTCGAAGAGAATGGTCCTCACCTGCCGATGCTCGCAATGCAG
ACGCTTCCCGGCGATTGTATTCCTCAGTCTTCCTCGGTAGTCCTGACAAT
TTCGGAACGAGTGCAAGCGGTGATGCCAGCAATGCCAGCATAGGAAGTGG
AGAGGGCACCGGCGAGGAGGACGACGATGCGAGCGGCAAAAAGAACCAAA
AGAAACGTGGCATTTTCCCAAAAGTAGCAACCAACATATTGAGAGCGTGG
CTGTTTCAGCATTTAACGCATCCCTACCCATCCGAGGACCAGAAGAAACA
ATTGGCCCAGGACACCGGCCTAACGATACTGCAAGTGAATAATTGGTTCA
TCAATGCGCGGCGGAGAATTGTCCAGCCAATGATCGATCAATCGAATCGT
GCAGTCTATACACCGCATCCAGGTCCCTCCGGATATGGCCACGACGCCAT
GGGCTACATGATGGACAGCCAGGCGCATATGATGCACCGTCCGCCCGGAG
ATCCGGGCTTCCACCAGGGCTATCCGCATTACCCGCCCGCCGAGTACTAC
GGCCAGCACTTGGCAAGCTTTCTAGACCAT
FMO11343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-RA | 4226 | CG17117-RA | 2040..2693 | 9..662 | 3270 | 100 | Plus |
| hth-RC | 6557 | CG17117-RC | 2171..2738 | 95..662 | 2840 | 100 | Plus |
| hth-RC | 6557 | CG17117-RC | 2040..2131 | 9..100 | 460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10511380..10511540 | 662..502 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 10521072..10521221 | 368..219 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 10533911..10534007 | 195..99 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 10561909..10561996 | 96..9 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 10514266..10514345 | 447..368 | 400 | 100 | Minus |
| 3R | 32079331 | 3R | 10511759..10511818 | 504..445 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:44:43 has no hits.
FMO11343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:26 Download gff for
FMO11343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RG | 410..1073 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:11 Download gff for
FMO11343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RA | 2033..2696 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:21 Download gff for
FMO11343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RA | 2033..2696 | 1..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:21 Download gff for
FMO11343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10521072..10521220 | 220..368 | 100 | <- | Minus |
| 3R | 10529439..10529462 | 196..219 | 100 | <- | Minus |
| 3R | 10533911..10534006 | 100..195 | 100 | <- | Minus |
| 3R | 10561905..10562000 | 1..99 | 93 | | Minus |
| 3R | 10511375..10511537 | 505..667 | 97 | <- | Minus |
| 3R | 10511759..10511817 | 446..504 | 100 | <- | Minus |
| 3R | 10514268..10514344 | 369..445 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:11 Download gff for
FMO11343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6337097..6337259 | 505..667 | 97 | <- | Minus |
| arm_3R | 6337481..6337539 | 446..504 | 100 | <- | Minus |
| arm_3R | 6339990..6340066 | 369..445 | 100 | <- | Minus |
| arm_3R | 6346794..6346942 | 220..368 | 100 | <- | Minus |
| arm_3R | 6355161..6355184 | 196..219 | 100 | <- | Minus |
| arm_3R | 6359633..6359728 | 100..195 | 100 | <- | Minus |
| arm_3R | 6387627..6387722 | 1..99 | 93 | | Minus |
