FMO11344.5prime Sequence
506 bp (506 high quality bases) assembled on 2011-12-09
> FMO11344.5prime
CAGTCGACATGGCCATCCTGCCGCTGAGGACGCAGGTGCGCGGGCCAGCG
CCCAGTGCGAATATTGAGAGCGACATCATTGATGAGTCACTGTACTACTT
CAAAGCCAATGTCTTCTTTCGCACGTACGAAATCAAGTCCGACGTGGATC
GCGTGCTCATCTATGTGACGCTCTACATAACAGAGTGCCTCAAGAAGCTC
AATCGCTCCACGAGCAAGGCCCAGGGACAGCAGGACATGTACAGCCTGGC
CATCTCCAAGTTCGACATTCCCGGCGATGCTGGCTTCCCATTGAACGCCG
TCTATGCCAAGCCGCAAACGGCCCAGGATGCGGATCTGATGCGCCAGTAC
CTGCTGCAGCTGCGCCACGAAACCGGCAACCGGGTACTGGAGAAGGTCTT
CAACACCGAGGATGGCAAGCCCAATAAATGGTGGACCTGCTTCGCGAAGA
AAAAGTTCATGGAGAAGAGTCTGGCTGGACCTGGACAAGCAAGCTTTCTA
GACCAT
FMO11344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:44:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc3A-RE | 1123 | CG4560-RE | 168..649 | 7..488 | 2410 | 100 | Plus |
| Arpc3A-RC | 814 | CG4560-RC | 168..649 | 7..488 | 2410 | 100 | Plus |
| Arpc3B-RC | 693 | CG8936-RC | 185..616 | 45..485 | 445 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15835195..15835547 | 136..488 | 1765 | 100 | Plus |
| 3R | 32079331 | 3R | 15834956..15835086 | 7..137 | 655 | 100 | Plus |
| X | 23542271 | X | 17104648..17104808 | 485..325 | 310 | 79.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:44:50 has no hits.
FMO11344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:27 Download gff for
FMO11344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RD | 283..773 | 1..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:17 Download gff for
FMO11344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 162..652 | 1..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:25 Download gff for
FMO11344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 162..652 | 1..492 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:25 Download gff for
FMO11344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15834950..15835086 | 1..137 | 97 | -> | Plus |
| 3R | 15835197..15835550 | 138..492 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:17 Download gff for
FMO11344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11660672..11660808 | 1..137 | 97 | -> | Plus |
| arm_3R | 11660919..11661272 | 138..492 | 99 | | Plus |
