Clone FMO11347 Report

Search the DGRC for FMO11347

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:47
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42397-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11347.5prime Sequence

560 bp (560 high quality bases) assembled on 2011-12-09

> FMO11347.5prime
CAGTCGACATGAAAGGTTTTCAGATAATCGGATTACTTGGATTGTTTGCA
CTCCTTGTAAGTGGATCGACCTCGTCTGGAGAAGATACCAACATCAAACT
AACAACAGACGAATCTACTACTGTGGAGGATACCACGGAGGTTTTAGTCA
CAACACTACCACCTCCAGTCCTGTGTGCTGATGAAGATCTGTTTCTCCCA
GCACCCGACTGCAGAGAGTATTATCAATGCCTGTACGGTGAGGGAATTTT
AAAGATATGTCCAGACGGCCTCTATTGGGATCGGGAGCTGAATGTTTGCG
CCTGGGACTCACAGCATTGTGCTGATGACAAGAACGAGACCACCACACCA
TCGACCTTGAATTGCGCATCCGGGTTACCATTTTTGCCCTATATACCGGA
CTGCACTAAGTTTATCCAGTGCGTCTACAATATTGGCTTTAAACTAAGCT
GCCCGAGTGGTTTGTATTGGAACCAACCTCTTCAATCGTGTGACTATACC
TGCGATAATGCGATTGAGTTCTCTGGCGCACACCAAGTGCAAGCAAGCTT
TCTAGACCAT

FMO11347.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG42397-RA 651 CG42397-RA 35..570 7..542 2680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11973166..11973695 542..13 2650 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:43:52 has no hits.

FMO11347.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:21 Download gff for FMO11347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42397-RA 35..573 7..546 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:36 Download gff for FMO11347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42397-RA 35..573 7..546 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:51 Download gff for FMO11347.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42397-RA 35..573 7..546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:51 Download gff for FMO11347.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11973163..11973695 13..546 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:36 Download gff for FMO11347.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11966263..11966795 13..546 99   Minus