Clone FMO11348 Report

Search the DGRC for FMO11348

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:48
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42495-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11348.5prime Sequence

453 bp (453 high quality bases) assembled on 2011-12-09

> FMO11348.5prime
CAGTCGACATGGAATCACTCGCAAAATATCGATACAGTTTGGTGGCTGGC
TCCTTCGCAGCTGCAGGAAGCTTTTTCGGAAAACTTCCCAGCCACCTGAG
CGCCCAAAAACTACTGAATACTTCGCAAATAAATGAAGACTTTTCTTATT
TAGAAATAGCATTACTTCAGCTGCTGCCACTAGTGTTAATGGTAACATGC
AACGTTTGCAACTTGCGTTTCTTTTTGAAGGCCCTGCAAATGACTGAACA
AACTTTAACGTGCGTCGTTTTAACTGCCGCTTCGAATTATGTCTTATCGT
TTGTCCTAGGTGCGCTTGTTTATCGGGAGCCACTGACAGTACTATCTGGC
ATCGGAATAACTCTCATTCTGGCTGGTCTTTGGTTTCTTTGCGACGGAGG
AACAGTCGAGTCCGAAAAGCAGGACAAAATGGAAGCAAGCTTTCTATTTT
TTT

FMO11348.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42495-RA 654 CG42495-RA 75..500 9..434 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18667644..18667793 150..299 750 100 Plus
3L 28110227 3L 18667435..18667579 9..153 725 100 Plus
3L 28110227 3L 18667842..18667981 295..434 685 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 00:43:58 has no hits.

FMO11348.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:22 Download gff for FMO11348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42495-RA 75..500 9..434 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:32:43 Download gff for FMO11348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42495-RA 75..500 9..434 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:14:55 Download gff for FMO11348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42495-RA 75..500 9..434 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:14:55 Download gff for FMO11348.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18667435..18667579 9..153 100 -> Plus
3L 18667648..18667793 154..299 100 -> Plus
3L 18667847..18667983 300..438 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:32:43 Download gff for FMO11348.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18660535..18660679 9..153 100 -> Plus
arm_3L 18660748..18660893 154..299 100 -> Plus
arm_3L 18660947..18661083 300..438 97 -> Plus