Clone FMO11350 Report

Search the DGRC for FMO11350

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:50
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34302-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11350.5prime Sequence

536 bp (536 high quality bases) assembled on 2011-12-09

> FMO11350.5prime
CAGTCGACATGGATCCACTCCGCCGTAATCCTCTTTTGGAAATTACCAAA
TGTGAGATGTGCTCCAATTTGGTATACCATTTTCCGACTGGATTGTGTGC
CCGCTGCTTAACTCTTTGGGCCGGAAAGAAACCAATGGACGGACTGAGAC
TGACCGTGGACCAATCGAAGGCTTTCCTTGTGAACATTGCTCGCTGTTCG
GATGCCCAGGATAAGAGCCATATGGACCCCACCTTTCAACGCGTGATTGC
CGAGGTGAGATTGCAGCGCCAACAGAAACTTGAGCTGTTCCAGAAGATTC
GCCAGCAGTTACAGCTTTCCGTACTCACCGGTTCCTTCTATGACAAAAAT
CCAAAATACGAAGTCAATGAGGACTATTGGAATATACCGGATATCGTCGA
TGCAGACATGCTGATGTTTCAGAAAAATATTGACCTGCTTGCAGATATAT
CCACCATTTCGTCAGAGATCAATGACGAAAATAAATACAATAAGCGCGAA
AATAGAAAACGAAATTTGGCAAGCTTTCTAGACCAT

FMO11350.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG34302-RB 825 CG34302-RB 213..722 9..518 2535 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9823102..9823611 518..9 2535 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 00:45:12 has no hits.

FMO11350.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:29 Download gff for FMO11350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34302-RB 209..731 1..530 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:33 Download gff for FMO11350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34302-RB 209..731 1..530 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:37 Download gff for FMO11350.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34302-RB 209..731 1..530 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:37 Download gff for FMO11350.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9823093..9823615 1..530 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:33 Download gff for FMO11350.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5648815..5649337 1..530 98   Minus