Clone FMO11351 Report

Search the DGRC for FMO11351

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:51
Vector:pMK33-CFH-BD
Associated Gene/TranscriptIFa-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11351.5prime Sequence

242 bp (242 high quality bases) assembled on 2011-12-09

> FMO11351.5prime
CAGTCGACATGGCTCTTCGATTCACACTCACTCTGCTCCTGGTCACGATC
CTGGTCGCAGCCATACTTTTGGGCTCCAGTGAGGCAGCCTACAGGAAGCC
TCCGTTCAACGGCAGCATCTTCGGCAAACGCAACAGCCTAGACTACGACA
GCGCCAAAATGAGCGCCGTTTGCGAGGTGGCCATGGAGGCGTGTCCCATG
TGGTTTCCCCAGAACGACAGCAAAGCAAGCTTTCTAGACCAT

FMO11351.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
SIFa-RB 526 CG33527-RB 78..293 9..224 1080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24577934..24578066 141..9 665 100 Minus
2R 25286936 2R 24577799..24577883 224..140 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:45:18 has no hits.

FMO11351.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:30 Download gff for FMO11351.5prime
Subject Subject Range Query Range Percent Splice Strand
IFa-RB 62..284 1..224 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:38 Download gff for FMO11351.5prime
Subject Subject Range Query Range Percent Splice Strand
IFa-RB 71..293 1..224 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:41 Download gff for FMO11351.5prime
Subject Subject Range Query Range Percent Splice Strand
SIFa-RB 71..293 1..224 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:41 Download gff for FMO11351.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24577799..24577881 142..224 100 <- Minus
2R 24577934..24578073 1..141 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:38 Download gff for FMO11351.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20465322..20465404 142..224 100 <- Minus
arm_2R 20465457..20465596 1..141 97   Minus