FMO11352.5prime Sequence
1054 bp (981 high quality bases) assembled on 2011-12-09
> FMO11352.5prime
CAGTCGACATGTTCCTACAATGTCCTTCGGTGATGCGAGGTTCTAAACAC
TTTTCTCAGCACATGAGCGATTTCAGTTCTGGAAGCCATCAGAACACGGA
CAATTTCAGCGATTGTTGGTTGGAATCCAATAGTAGTCAGGATTCGTATT
TCGGTCAATCTAGTCGACTGAAACTTGCCCTCCTGGATTACAAACAGTTC
AACGCTGCAAGGACTATTCAGTGTCATGTGAGGGGATTTTTGGCCAGAAG
TACTCTTAAAAGGCAGATCGATGCTGCCACCATCATTAGCAAGTGGTGGC
GTGGTTTCTGGGTGCGACACTCAAAGTTCTCCTTTATGCAACAGCTGTTA
CAGCAGAGGATCATCCAGTATCACCACGATATGGCCACTAAGATTCAGGC
GCTGTTCCGCGGATGGATGACTCGCCAGTACTTCCAGGACTTCCAGGGCA
TGAAGTCGCTCCGAATACAGTATGTGGAAGATATGCTCAGTTCGCTTTAC
AGAAAGGTCCACAGAATGCGAAAGGAACATATGCTACCAGGAATTTATGC
ATTAAGGGAATCTGATCTGCTAAGTAAGATCGAGGACCTTTCTAGTACCT
TTGGCTACCGCTTTCATAACGGCCGTGTGCGGGCAGCCATTGCAATGAAG
CGATCCTTCATAAAACGACCGGCGACATGAGTTCCGAAAGGGAAATACTT
ATTCCAAGTGCCTTATCCGGGACCCTATATAGAAAACATTAACGACTTAG
AATTTACCTTGCCAAAGCGAATGACACCACGTTTGCAGCGTACGATTCTG
GTATATGACAAGGCAATGAGAGATAAGAATGTGGAGAATGTGTACATGAA
CTATTCACCAAACGTCGTATGAGCATGCATGTCATGCGAGAAGAATATGC
GAAATCGTTTTTGCAAAAATTTTGTAAAGCGTTTGGCAAAAAGGAACAGA
CTGGAAACGCACAGGATCGTAACATTAAAATAACTATCTTGATGATCTCC
AACGACCGCTGATGAAATATATTGTTTTGCAAGCCCAACTTAAAAGAACG
AATA
FMO11352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12448-RC | 1293 | CG12448-RC | 65..1105 | 8..1047 | 4835 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15941505..15942062 | 8..565 | 2790 | 100 | Plus |
| 2L | 23513712 | 2L | 15942125..15942416 | 566..857 | 1350 | 99 | Plus |
| 2L | 23513712 | 2L | 15942480..15942666 | 861..1047 | 505 | 90.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:38:30 has no hits.
FMO11352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:49 Download gff for
FMO11352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 56..1109 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:54 Download gff for
FMO11352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 56..1109 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:03 Download gff for
FMO11352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 56..1109 | 1..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:03 Download gff for
FMO11352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15942125..15942420 | 566..860 | 98 | -> | Plus |
| 2L | 15942480..15942641 | 861..1022 | 92 | -> | Plus |
| 2L | 15941496..15942062 | 1..565 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:54 Download gff for
FMO11352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15941496..15942062 | 1..565 | 99 | -> | Plus |
| arm_2L | 15942125..15942420 | 566..860 | 98 | -> | Plus |
| arm_2L | 15942480..15942641 | 861..1022 | 92 | -> | Plus |
