Clone FMO11353 Report

Search the DGRC for FMO11353

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:53
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG16997-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11353.5prime Sequence

528 bp (342 high quality bases) assembled on 2011-12-09

> FMO11353.5prime
CAGTCGACATGTGGCGCCATCGCCACCTGGCCACTATCCTCCTGCTGGCG
GTGTGCGTTTCCCAAGGATCTGGATTAGCCTTGGACCAACCCGAAGGACG
CGTTGTGGGTGGAAAAGCGGCGGCGGCCAATAGTGCTCCGTATATAGTGT
CCATGCAGTACGGAGGAACTCACTATTGCGCCGCTAACATCATTAATTCC
AACTGGCTGGTAACGGCTGCTCACTGCCTGGCCAATAGGAATCAAGTACT
TGGAAGCACCCTGGTGGCTGGAAGCATTGCGGTGGCCGGGAACAGCGAGC
ACAACACAGAAGAGGCAAACCCCCACTATGTGATCATGATCTTAATCCGG
CGGAACTGTGCCTATGACTCGATTTGTTTTCCGCCCCCCGCCTTCCTTGG
ACCGTGCAGTGGCCCGGGGAACCTGCCACCTCCGGGGTGGGGCAATGGAA
AGGTAACTCTTTGGTGGGGGAAAAAAAAAAAACAAAACCCCCCAATCCAA
ACCCCCCAGAGGGAAAAAAAACCCATAA

FMO11353.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Phae2-RC 1147 CG16997-RC 38..514 8..469 1785 93.9 Plus
Phae2-RB 886 CG16997-RB 38..514 8..469 1785 93.9 Plus
Phae1-RB 1248 CG16996-RB 319..539 89..310 395 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12111147..12111503 8..362 1560 98.3 Plus
2L 23513712 2L 12109735..12109935 89..289 375 79.1 Plus
Blast to na_te.dros performed on 2014-11-27 00:38:38 has no hits.

FMO11353.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:49 Download gff for FMO11353.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16997-RB 10..391 1..380 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:59 Download gff for FMO11353.5prime
Subject Subject Range Query Range Percent Splice Strand
Phae2-RB 33..414 1..380 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:07 Download gff for FMO11353.5prime
Subject Subject Range Query Range Percent Splice Strand
Phae2-RB 33..414 1..380 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:07 Download gff for FMO11353.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12111142..12111523 1..380 96 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:59 Download gff for FMO11353.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12111142..12111523 1..380 96 == Plus