FMO11354.5prime Sequence
710 bp (710 high quality bases) assembled on 2011-12-09
> FMO11354.5prime
CAGTCGACATGAAGTCTGCTATTATTTGCGTGTTCTTCATCGCGACTGCA
ACGTGGGCTCAGGATACAAGGCCAGAAGTTCCCATCTATCTACCGCCGCC
CTCTATAACAACGACGACCACAGAGGCACCAGTAACGACCACTATAACAG
AGGAGCCAACAACAGAATCCTTGACAACTACAACAACTGAGACCAGTTCC
ACATTCTCAACAACCGAGCCTGCCGCAACTACAACAACGGAAATATCCAC
AACTTCGACAACCGAACCAAGTACTACAACTTTAACAACAAAGAAGATCC
CATCAACAACAACAGCAATCATCACAACTACAGGAGTAGAAACCTCCACA
ACTACAACGACAGAAACCACCACAGCTTCCACAACACAAGGCGATCCAAT
ATATCCGACTTACAGACCTCCCTACATGCGGCCCTCGACCTCAGGGATAC
CTCCCGTTTCTTCCACAAACCCCTGGATCTGGAACAATGGCAATCCGGCA
GTAAAATGTTATCTGCGAAATCAACAGGAATACAGAAGTGATTGTTATGG
AGTGGGTTGGCATCCGACGACAATTTGTTACCGCTGCTGCTACTATGATC
AAAACAGAATCGCCGGATGCAGTAAAATTCACCGAGGACGGTGTTCGTGG
TACGATTATGCTCGATGGATATCACCGAATTTCTATGTCTATGCAAGCTT
TCTAGACCAT
FMO11354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30026-RB | 821 | CG30026-RB | 44..727 | 9..692 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11408865..11409406 | 550..9 | 2710 | 100 | Minus |
| 2R | 25286936 | 2R | 11408670..11408813 | 692..549 | 720 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2539 | 146..374 | 278 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2697 | 103..417 | 240 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2521 | 208..401 | 237 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6921 | 175..386 | 224 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2491 | 220..401 | 208 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6814 | 294..390 | 186 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6901 | 128..318 | 186 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2425 | 274..386 | 184 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2722..2925 | 215..409 | 177 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2401 | 301..386 | 167 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2989 | 60..314 | 165 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6865 | 226..390 | 150 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6843 | 268..401 | 150 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6853 | 241..390 | 149 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1591 | 300..371 | 133 | 68 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1154 | 302..385 | 132 | 66.7 | Plus |
FMO11354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:50 Download gff for
FMO11354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30026-RB | 26..712 | 9..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:03 Download gff for
FMO11354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30026-RB | 44..730 | 9..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:10 Download gff for
FMO11354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30026-RB | 44..730 | 9..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:10 Download gff for
FMO11354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11408666..11408812 | 550..696 | 98 | <- | Minus |
| 2R | 11408866..11409406 | 9..549 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:03 Download gff for
FMO11354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7296171..7296317 | 550..696 | 98 | <- | Minus |
| arm_2R | 7296371..7296911 | 9..549 | 100 | | Minus |
