Clone FMO11355 Report

Search the DGRC for FMO11355

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:55
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG2022-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11355.5prime Sequence

605 bp (605 high quality bases) assembled on 2011-12-09

> FMO11355.5prime
CAGTCGACATGTTTCGTAGCTTGGTGAATATTACAAGCAAATACAAAGTC
CTACGCGGCATGATATCGTATGGCACCCTCTGGCCCTGCGGCTCCCTCAT
CGAGCAGACCATGATCGAGAAGAAGACATTCCGGACGTACGACTGGATGA
AGTGCCTTAGGTTCAGCTTATTCGGCTTCTTCTTTATGGGGCCCACCATA
TATGTGTGGATCAGATTGGCCAGCGTTATGTGGCCGCGCACCGACATTAA
GTCATCGCTCTGCAAGGCGATCACCGAGCAGACCGCTTATGATCCGATGG
CCATCAGCTCGTTCCTCTTCTTCATGACCTTGATGGAGGGCAACTCGTAC
GCGGAGGCCAAGCGGGAGGTCAGCGATAAATTCCTGGACGCCTACAAGGT
GGGCGTTATTTATTGGCCCTGCGTGCAGACGGTGAACTTCGCCTTTGTTC
CGGCGCGAAACCAGGTCGTGTTTACCTCCTTCTTCAGCATGTGCTGGACC
ACCTTCCTGGCCTACGTCAAGTTCCTGCAGCTGCACCCTCCCGTCGATGT
GGACCACCACGCCCTGGACATCCACTTCCTGGAGATGGCAAGCTTTCTAG
ACCAT

FMO11355.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2022-RB 902 CG2022-RB 156..734 9..587 2895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4986668..4986888 587..367 1105 100 Minus
3R 32079331 3R 4988249..4988460 370..159 1060 100 Minus
3R 32079331 3R 4988536..4988689 162..9 770 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:38:57 has no hits.

FMO11355.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:51 Download gff for FMO11355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2022-RB 147..741 1..594 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:07 Download gff for FMO11355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2022-RB 147..741 1..594 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:12 Download gff for FMO11355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2022-RB 147..741 1..594 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:12 Download gff for FMO11355.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4988251..4988458 161..368 100 <- Minus
3R 4988538..4988697 1..160 97   Minus
3R 4986661..4986886 369..594 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:07 Download gff for FMO11355.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 812383..812608 369..594 98 <- Minus
arm_3R 813973..814180 161..368 100 <- Minus
arm_3R 814260..814419 1..160 97   Minus