FMO11356.5prime Sequence
1135 bp (1023 high quality bases) assembled on 2011-12-09
> FMO11356.5prime
CAGTCGACATGTACATAATTTAAAAGAGATTTTCGAAAACAAAATGACTT
GCGATGATACCACCGAAGCGCTCGCCACTCACATGTGTGAGCTGTTGGAG
TTTTATATGCTGCCGGAGCTGAAGGAGGACCTGGACAACATTCAGCTGGA
GACGTCGCAATTCGACAGCTACCATTCCCTACTTATCCAGGATCTGCCAA
AGCTCTACGATTTGGTGCAGGAATTCCTCCTGAAAAGTGGTGATGCAGGA
CACGAAGAGCTAAGATTCAAGCTCCTCCTGCTGATTTGCGAATTGACAGC
TTCGCCTACAATTTACCAACTAAAGGACGACTCTGGTAATCTCCTGAAGT
ATGCTAATGATTTGGCTAGTAAGCTGTCTTCCCATTGGTGGGAGTCGACG
GATGATCAATTCCTGAAATACTACGAGAAGAAACTGCACAGGGATTGCTG
GAAGAGACAACTAGGAGCTGTGCATGGTTTCGGCAGATATCTAGAGCTTC
GTTACGGAAAGAAATCCGCAATGTCCACCCAAATGTTGGCTTTTGCACTA
TCCGTGGGTCTTAATGTGCGCGAATGCTATGATACTATCTACAAGCAACT
TGGGGTCAAGATCTTCTCAGTGATGTTAAAATTTAGCGACTCCAAGGACA
TTCAGGAACTGAACGTGCACAGTGTGATCTATGACCATGCCCTCAAGGAT
GTCTACAACATGGACTCAATTGAAGCCATCGAATCTGTTTGGAACTGCCT
GTATTTCTGTCTTGATCACTTTGTAGATCTAGATGCTTTCACGTGGAACC
AATGCGACGACATGCTGGAACGCCTCATTCAGAACGTGACAATGGCCTCC
AGCCCAAAAGTTTTAATCTGCCTGCTGCAGTATATCATCCGATTAGGATA
CTACTTCACCATCAATCGCAGCGATGTGAAAACTGCTTTGGGCCATGGAA
AATATGCGAACCAGATAATTGGTTAGCGTGTCGGACGTATGCCCTTGCTC
TAATGTAGCACAGCTATCGGTTGGCCAAGCATCTACAAATGCTTGTCCTG
AGTCAGCAGCCTGCCTCCAAGGTGTCAGGATATGCACTGCTTACTGATCA
CTGCTAAAATGCATTCTGGATTGCATCATGCCTAT
FMO11356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16734-RD | 1393 | CG16734-RD | 11..1142 | 12..1135 | 5065 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9255062..9255309 | 12..259 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 9255360..9255598 | 258..496 | 1195 | 100 | Plus |
| 3R | 32079331 | 3R | 9256071..9256260 | 793..984 | 800 | 96.9 | Plus |
| 3R | 32079331 | 3R | 9255860..9256015 | 638..793 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 9255661..9255804 | 495..638 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:39:04 has no hits.
FMO11356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:52 Download gff for
FMO11356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16734-RD | 7..1142 | 9..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:11 Download gff for
FMO11356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16734-RD | 7..1142 | 9..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:15 Download gff for
FMO11356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16734-RD | 7..1142 | 9..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:15 Download gff for
FMO11356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9255058..9255309 | 9..259 | 99 | -> | Plus |
| 3R | 9255362..9255598 | 260..496 | 100 | -> | Plus |
| 3R | 9255663..9255803 | 497..637 | 100 | -> | Plus |
| 3R | 9255860..9256015 | 638..793 | 100 | -> | Plus |
| 3R | 9256072..9256421 | 794..1135 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:11 Download gff for
FMO11356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5081582..5081737 | 638..793 | 100 | -> | Plus |
| arm_3R | 5080780..5081031 | 9..259 | 99 | -> | Plus |
| arm_3R | 5081084..5081320 | 260..496 | 100 | -> | Plus |
| arm_3R | 5081385..5081525 | 497..637 | 100 | -> | Plus |
| arm_3R | 5081794..5082143 | 794..1135 | 91 | | Plus |
