FMO11358.5prime Sequence
722 bp (722 high quality bases) assembled on 2011-12-09
> FMO11358.5prime
CAGTCGACATGTCGAGACTCACCGAGGAAATGGTGATAGCGCGGGCCAAG
CAATCCGATTTGTCCCTGATCAAAAAGCTAAATTGCTGGGGCAGTGATCT
CAGCGATGTGTCCATCATCAAGCGAATGCGTGGAGTGGAAGTTCTGGCTC
TTAGTGTCAACAAGATCAGCACGCTGTCGACCTTCGAGGATTGCACCAAA
CTGCAGGAGCTATATTTGCGCAAGAACAGCATCTCTGACATCAACGAGAT
CGCCTACCTACAAAATCTTCCGAGTCTCAGGAATCTCTGGCTGGAGGAAA
ATCCCTGCTGCGAACGAGCGGGTCCCAACTATCGTTCGATCGTATTACGC
GCCCTGCCGAACCTCAAGAAACTCGACAATGTTGAGGTCACACAGCAGGA
GGTGGAGGATGCGCTGCGTGGAGGCGGAGTCGCCGCACCCGAGGACGAGG
TCTACGAGGATGCATACCAGCAACAGCAGCAGTCGAGGCGATCATCGCCG
CAGCAGATACTGCAGCAGCAGCAACACAGCTACCCGCAACACTCGCCGCC
GCCGCAGCAGCAATATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGC
GCGGCTGCACCACTCCCACGAAAGAGGTAAGTGGCTGCCATTGTCTGTGT
GGATTTTCACACACCACGCCCCGGTTTAGCTGCTATAATCTCTTGCCTTG
GCAAGCAAGCTTTCTAGACCAT
FMO11358.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14995-RF | 3344 | CG14995-RF | 1142..1837 | 9..704 | 3480 | 100 | Plus |
| CG14995-RI | 3067 | CG14995-RI | 1142..1760 | 9..627 | 3095 | 100 | Plus |
| CG14995-RG | 3229 | CG14995-RG | 1636..2254 | 9..627 | 3095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4097429..4097804 | 704..329 | 1880 | 100 | Minus |
| 3L | 28110227 | 3L | 4098026..4098201 | 328..153 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 4101476..4101556 | 89..9 | 405 | 100 | Minus |
| 3L | 28110227 | 3L | 4100780..4100846 | 154..88 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6865 | 451..599 | 303 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2469 | 466..600 | 272 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6938 | 466..600 | 269 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2442 | 466..600 | 242 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6900 | 466..598 | 242 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2514 | 466..600 | 230 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2530 | 466..621 | 211 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2815..2965 | 466..612 | 204 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2763..2889 | 465..597 | 199 | 66.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1074..1149 | 466..541 | 136 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6837..6956 | 466..588 | 130 | 59.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1089..1157 | 466..533 | 108 | 63.8 | Plus |
FMO11358.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:53 Download gff for
FMO11358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RF | 1136..1848 | 1..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:23 Download gff for
FMO11358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RF | 1136..1848 | 1..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:25 Download gff for
FMO11358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RF | 1136..1848 | 1..716 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:25 Download gff for
FMO11358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4098026..4098199 | 155..328 | 100 | <- | Minus |
| 3L | 4100780..4100845 | 89..154 | 100 | <- | Minus |
| 3L | 4101477..4101560 | 1..88 | 95 | | Minus |
| 3L | 4097418..4097804 | 329..716 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:23 Download gff for
FMO11358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4097418..4097804 | 329..716 | 98 | <- | Minus |
| arm_3L | 4098026..4098199 | 155..328 | 100 | <- | Minus |
| arm_3L | 4100780..4100845 | 89..154 | 100 | <- | Minus |
| arm_3L | 4101477..4101560 | 1..88 | 95 | | Minus |
