Clone FMO11360 Report

Search the DGRC for FMO11360

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42493-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11360.5prime Sequence

488 bp (488 high quality bases) assembled on 2011-12-09

> FMO11360.5prime
CAGTCGCCATGCATTTAAGAAAATTTTTGTATTGTTGGCCATTGAAATAT
GGCGTTATTACTGTGGGCATTGCTTTTGGACTCACGGACTTCATCGTGGG
CAGCATTGCATGGGACATGGTTATCAGAAACAAATATCCAGACTATGTGG
TCGAGTTCTTCAGAACCATGGACACCCGAATCTGTGTGTCCGGATTTGCC
ACCGTTTTCTGGTTGATGATGACCAACCACTTTCTTTTGATCTATGCCGT
CTTTTACCACAAACTTTTGATAATCGGAACTTGGCTGTTGATAAACTACA
TGGTATTTTTGTTCACCCTTGTCACCGTGTTGTTGGATAGCTTGCTAATC
CTTAGAATAATTGCCCTCGGATACTGTTTGATCGTGGTGAAGTCCTATTA
TAGTGAGTTGGCTGAGTCTCAGGAGGAATCATCCGATTCCAGTGAGGAAT
CTTCTAGTAGTGATAGCGATGCAAGCTTTCTAGACCAT

FMO11360.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42493-RA 590 CG42493-RA 67..528 9..470 2280 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11778592..11778840 9..257 1245 100 Plus
2R 25286936 2R 11779064..11779173 361..470 520 98.2 Plus
2R 25286936 2R 11778905..11779007 258..360 515 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:39:38 has no hits.

FMO11360.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:54 Download gff for FMO11360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42493-RA 15..479 9..474 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:32 Download gff for FMO11360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42493-RA 67..531 9..474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:31 Download gff for FMO11360.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42493-RA 67..531 9..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:31 Download gff for FMO11360.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11778592..11778840 9..257 100 -> Plus
2R 11778905..11779007 258..360 100 -> Plus
2R 11779064..11779176 361..474 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:32 Download gff for FMO11360.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7666097..7666345 9..257 100 -> Plus
arm_2R 7666410..7666512 258..360 100 -> Plus
arm_2R 7666569..7666681 361..474 96   Plus