Clone FMO11361 Report

Search the DGRC for FMO11361

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:61
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34161-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11361.5prime Sequence

386 bp (386 high quality bases) assembled on 2011-12-09

> FMO11361.5prime
CAGTCGACATGAGCAGTCAAATTAAAAAGTCCAAAACGACCACCAAGAAA
TTGGTGAAATCATCTCCGAAAGCTCAACTTCCAAAAGCTGCGGCACAGAA
TCAAATTTTTAGTTGCCAATTCGAGGTGTTTGGTCATGTGCAAGGTGTCT
TCTTTCGCAAGGCCATTGAGCTGGGCATAACTGGCTGGTGCATGAACACA
ACTCAAGGAACGGTTCAGGGAATGCTCGAAGGATCCTTGGACCAAATGAC
TGATATGAAATACTGGCTGCAGCACAAGGGAAGTCCTCGTTCGGTGATCG
AAAAGGCTGTATTCTCCGAGAATGAACCACTGCCCATCAACAACTTTAAG
ATGTTCTCGATTCGTCGCGCAAGCTTTCTAGACCAT

FMO11361.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG34161-RB 553 CG34161-RB 66..425 9..368 1800 100 Plus
CG34161-RC 563 CG34161-RC 66..440 9..368 1640 96 Plus
CG34161-RA 577 CG34161-RA 66..440 9..368 1640 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10581500..10581637 146..9 690 100 Minus
2L 23513712 2L 10581094..10581205 368..257 560 100 Minus
2L 23513712 2L 10581260..10581358 257..159 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:39:45 has no hits.

FMO11361.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:04:55 Download gff for FMO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34161-RB 26..385 9..368 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:36 Download gff for FMO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34161-RB 66..425 9..368 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:34 Download gff for FMO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34161-RB 66..425 9..368 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:34 Download gff for FMO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10581261..10581355 162..256 100 <- Minus
2L 10581424..10581440 145..161 100 <- Minus
2L 10581502..10581637 9..144 100   Minus
2L 10581094..10581205 257..368 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:36 Download gff for FMO11361.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10581094..10581205 257..368 100 <- Minus
arm_2L 10581261..10581355 162..256 100 <- Minus
arm_2L 10581424..10581440 145..161 100 <- Minus
arm_2L 10581502..10581637 9..144 100   Minus