FMO11371.5prime Sequence
680 bp (680 high quality bases) assembled on 2011-12-09
> FMO11371.5prime
CAGTCGACATGGATATAAAAGTATGGCGACTCCTTGGCCAGAGCTGCAGA
AGGAGTACAGCGCTGGTCAGGCACAGATCGAGCAGGATGCCGTGGTTGCC
CATTTCCATTATGGCAATGGCGCTGCTTAGCCTGACAAATAAAGGAATCG
CCAGTCAGTACGCCAGCGATGAAGGTTTGGACGAGATGGTGGGTCTAAGG
AGTCTGGAACACCGCGCGGAGGAGCAGCAGCCCGATCGCAGTACATCGAA
AATGCTCAGTGCCCTATTCGGATTCAGTCCCAGCACTCCACATCCCACAG
AGATGGCGATGGTCATGCCCCATCAGCTGCCGCCCATGTACTATAACGAT
TTCTATGAGGATCTGGTGACCACCAAACGCAATGATGTCCATTCCGCAGG
CTGCGACTGCAAAGTTACGAATGAGCTCGTGGATCTGGGTGGTCTGCACT
TCCCTCGCTTTCTGATGAATGCCGTTTGCGAATCGGGCGCTGGTCGGGAT
CTGGCCAAGTGCTCGCATGGATCCAATTGCAGGCCACTGGAATATAAGGT
AAAGGTCCTGGCACAGACCTCTCAGTCCGATCACCCCTATTCGTGGATGA
ACAAGGATCAACCTTGGCAGTTCAAAACGGTCACCGTAACTGCCGGCTGC
TTCTGCACAAAGGCAAGCTTTCTAGACCAT
FMO11371.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptth-RF | 1019 | CG13687-RF | 297..950 | 9..662 | 3255 | 99.8 | Plus |
Ptth-RE | 673 | CG13687-RE | 1..604 | 59..662 | 3005 | 99.8 | Plus |
Ptth-RG | 782 | CG13687-RG | 146..713 | 95..662 | 2840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 576081..576405 | 419..95 | 1625 | 100 | Minus |
2L | 23513712 | 2L | 575780..576023 | 662..419 | 1220 | 100 | Minus |
2L | 23513712 | 2L | 576514..576600 | 95..9 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:40:41 has no hits.
FMO11371.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:01 Download gff for
FMO11371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptth-RB | 297..950 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:16 Download gff for
FMO11371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptth-RE | 297..950 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:05 Download gff for
FMO11371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptth-RF | 297..950 | 9..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:05 Download gff for
FMO11371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 575780..576022 | 420..662 | 100 | <- | Minus |
2L | 576081..576404 | 96..419 | 100 | <- | Minus |
2L | 576514..576600 | 9..95 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:16 Download gff for
FMO11371.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 575780..576022 | 420..662 | 100 | <- | Minus |
arm_2L | 576081..576404 | 96..419 | 100 | <- | Minus |
arm_2L | 576514..576600 | 9..95 | 98 | | Minus |