FMO11372.5prime Sequence
953 bp (868 high quality bases) assembled on 2011-12-09
> FMO11372.5prime
CAGTCGACATGTATCTTACGTGCAGAAAATCGATTTTTGCCTTAACAGCG
GTTTTTGGTCGACGGTCAAGTGCGTTGAGGGCCAGCATTTCAGTAACACA
TCGAACGATTGGCACGCTTATAAAACCCAAGATGACAATAGCCGAAAGCT
CGCAAAAGTCCGCAACTAGGAAGCCAGACAGCATGGAGCCCATATTGAGG
CTGAACAACATTGAAAAGTCGCTGCAGGACACACGCGACTACCGCGGATT
GCAACTAGAAAATGGACTAAAGGTCCTGCTCATCAGCGATCCCAACACAG
ATGTCTCGGCGGCAGCGCTGTCCGTGCAAGTGGGCCACATGTCTGATCCC
ACGAACCTGCCTGGATTGGCCCACTTTTGCGAGCACATGCTGTTCCTCGG
CACCGAGAAGTATCCGCATGAGAATGGCTACACCACATACCTTTCGCAGA
GCGGCGGAAGCAGCAACGCCGCCACCTATCCCCTGATGACCAAGTACCAC
TTTCACGTGGCGCCGGACAAGTTAGATGGAGCCTTAGATCGCTTCGCGCA
GTTCTTCATAGCCCCCTTGTTCACGCCCAGTGCAACTGAGCGGGAAATCA
ATGCGGTAAACTCTGAGCACGAGAAAAACCTGCCCAGCGATCTGTGGCGC
ATCAAGCAGGTGAACCGCCACCTGGCAAAGCCTGACCATGCCTACAGCAA
GTTCGGCAGCGGCAACAAGACCACCCTATCCGAAATACCCCAAGTCCAAG
AACATTGATGTGCGGGTATGATCACTGACCATAGCGGTGAACTGATGGTG
TGATCAAAATAGCGGCCCACAACAGAGATGAAACACGATCATCTATGATC
CGAGGTCAGCGGTGGAATTCTCCGAAGTTGAGTAGACAGCTGATGAAAAG
TGCTGCTTGTGTACTGACTCACTGTGTGTCTCGTCATACTACATCATACA
TCT
FMO11372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ide-RB | 3439 | CG5517-RB | 224..980 | 9..766 | 3765 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20374896..20375170 | 608..334 | 1375 | 100 | Minus |
| 3L | 28110227 | 3L | 20374684..20374844 | 766..605 | 760 | 99.4 | Minus |
| 3L | 28110227 | 3L | 20375227..20375363 | 334..198 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 20375419..20375555 | 200..64 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 20375616..20375673 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:40:48 has no hits.
FMO11372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:02 Download gff for
FMO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ide-RB | 217..987 | 1..777 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:20 Download gff for
FMO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ide-RB | 218..988 | 1..777 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:09 Download gff for
FMO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ide-RB | 218..988 | 1..777 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:09 Download gff for
FMO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20374899..20375169 | 335..605 | 100 | <- | Minus |
| 3L | 20375227..20375361 | 200..334 | 100 | <- | Minus |
| 3L | 20375420..20375554 | 65..199 | 100 | <- | Minus |
| 3L | 20375618..20375677 | 1..64 | 93 | | Minus |
| 3L | 20374676..20374843 | 606..777 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:20 Download gff for
FMO11372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20367776..20367943 | 606..777 | 97 | <- | Minus |
| arm_3L | 20367999..20368269 | 335..605 | 100 | <- | Minus |
| arm_3L | 20368327..20368461 | 200..334 | 100 | <- | Minus |
| arm_3L | 20368520..20368654 | 65..199 | 100 | <- | Minus |
| arm_3L | 20368718..20368777 | 1..64 | 93 | | Minus |
