Clone FMO11374 Report

Search the DGRC for FMO11374

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:74
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15615-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11374.5prime Sequence

1001 bp (987 high quality bases) assembled on 2011-12-09

> FMO11374.5prime
CAGTCGACATGAGGATCCATCGGCATTTTGTGTTGGGTCTGCTCGGTGTG
CTCTGTTTGGCCATCGGAGGCAGTCAATCCAAGGCTGTGGTGGATCAGCA
GCCTGCAGCTTCCCAGGTGGATAGCAAAAGTGTCGCTCAGCAGAGGATCG
ATCTGGGATTGGGTCTGGGCGATGACCTGATCCACGACCACCATCACGAG
CACATAATCGAACATCACGAACATCATCACGAGCACCATGACCCCGGGTA
CTGGAAGAAGAAGGTCACTTGGAAGGAGGGATGGAAGAAAATTTGGAATC
CGGCTAAGAAACAAATCTGGAATCCTTCATGGAAGAAGATCTGGAAGCCA
CATTGGGTGAAAGTGCCCGGCTGGAAGGAAATACAGGTTCCAGCTTGGAA
ACAAATTTGGGTTCCTCACTGGAAAGAGATTTTAGTGCCAGCCTGGAAGG
ATATTCAAGTACCCGATTACAAGCAGATCTGGACACCAGAACTAGTCAAG
GTTGGCATTCCCGGAGAAAAATATTTGGGCAAGGATCACGAAGGTTGGGA
GTACACCAGCCACGATTTGTGGAAGAAGAAAGTGGTCTGGAAATCGCACT
GGAAGAAGATCTGGAAGCCAGCCAAGAAGCAAATCTGGGTGCCAGAGAAG
AAATTGGAGTGGAAGGAGGCATGGAAGCAGTACTGGAAGCCAGCGAAGAA
GGAAATCTGGACCGATAAATTGGAATGGAAGGAGGCATGGAAAGCAGATT
TGGGTGCCCGGCTGGAAAGAGATCTGGGTGCCTGGATGGAAAAAGATCTG
GAAGCCAGTGGTCATTTCAGAATGGTTCCCCTCGCCCGATCACCACGATC
ATCATCATCATGAGCACCATGATTGGGATCGCAAGGACACAGGTGTTACG
GCCACCAGGACGGCAGATGGCAAAGATAAGTGTCTGGAAACGAGATGACA
CCAATGCCGCTGGCAAGCCAACAATGCTGCAGCAGTGGCATTAGTTGGTT
A

FMO11374.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15615-RB 1429 CG15615-RB 148..1131 8..989 4810 99.5 Plus
CG12164-RB 1554 CG12164-RB 575..685 504..614 210 79.3 Plus
CG12164-RA 1404 CG12164-RA 575..685 504..614 210 79.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16794395..16794701 338..32 1535 100 Minus
2R 25286936 2R 16793424..16793686 983..722 1175 98.1 Minus
2R 25286936 2R 16793740..16793890 727..577 740 99.3 Minus
2R 25286936 2R 16794091..16794183 502..410 465 100 Minus
2R 25286936 2R 16793954..16794034 578..498 405 100 Minus
2R 25286936 2R 16794242..16794317 412..337 380 100 Minus
2R 25286936 2R 7312516..7312626 504..614 210 79.3 Plus
Blast to na_te.dros performed on 2014-11-27 00:45:41 has no hits.

FMO11374.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:32 Download gff for FMO11374.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15615-RB 141..1134 1..994 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:53 Download gff for FMO11374.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15615-RB 141..1134 1..994 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:52 Download gff for FMO11374.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15615-RB 141..1134 1..994 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:52 Download gff for FMO11374.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16793414..16793685 723..994 97 <- Minus
2R 16793745..16793888 579..722 100 <- Minus
2R 16793954..16794031 501..578 100 <- Minus
2R 16794093..16794182 411..500 100 <- Minus
2R 16794244..16794315 339..410 100 <- Minus
2R 16794395..16794700 33..338 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:53 Download gff for FMO11374.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12681749..12681820 339..410 100 <- Minus
arm_2R 12681900..12682205 33..338 100 <- Minus
arm_2R 12680919..12681190 723..994 97 <- Minus
arm_2R 12681250..12681393 579..722 100 <- Minus
arm_2R 12681459..12681536 501..578 100 <- Minus
arm_2R 12681598..12681687 411..500 100 <- Minus