FMO11374.5prime Sequence
1001 bp (987 high quality bases) assembled on 2011-12-09
> FMO11374.5prime
CAGTCGACATGAGGATCCATCGGCATTTTGTGTTGGGTCTGCTCGGTGTG
CTCTGTTTGGCCATCGGAGGCAGTCAATCCAAGGCTGTGGTGGATCAGCA
GCCTGCAGCTTCCCAGGTGGATAGCAAAAGTGTCGCTCAGCAGAGGATCG
ATCTGGGATTGGGTCTGGGCGATGACCTGATCCACGACCACCATCACGAG
CACATAATCGAACATCACGAACATCATCACGAGCACCATGACCCCGGGTA
CTGGAAGAAGAAGGTCACTTGGAAGGAGGGATGGAAGAAAATTTGGAATC
CGGCTAAGAAACAAATCTGGAATCCTTCATGGAAGAAGATCTGGAAGCCA
CATTGGGTGAAAGTGCCCGGCTGGAAGGAAATACAGGTTCCAGCTTGGAA
ACAAATTTGGGTTCCTCACTGGAAAGAGATTTTAGTGCCAGCCTGGAAGG
ATATTCAAGTACCCGATTACAAGCAGATCTGGACACCAGAACTAGTCAAG
GTTGGCATTCCCGGAGAAAAATATTTGGGCAAGGATCACGAAGGTTGGGA
GTACACCAGCCACGATTTGTGGAAGAAGAAAGTGGTCTGGAAATCGCACT
GGAAGAAGATCTGGAAGCCAGCCAAGAAGCAAATCTGGGTGCCAGAGAAG
AAATTGGAGTGGAAGGAGGCATGGAAGCAGTACTGGAAGCCAGCGAAGAA
GGAAATCTGGACCGATAAATTGGAATGGAAGGAGGCATGGAAAGCAGATT
TGGGTGCCCGGCTGGAAAGAGATCTGGGTGCCTGGATGGAAAAAGATCTG
GAAGCCAGTGGTCATTTCAGAATGGTTCCCCTCGCCCGATCACCACGATC
ATCATCATCATGAGCACCATGATTGGGATCGCAAGGACACAGGTGTTACG
GCCACCAGGACGGCAGATGGCAAAGATAAGTGTCTGGAAACGAGATGACA
CCAATGCCGCTGGCAAGCCAACAATGCTGCAGCAGTGGCATTAGTTGGTT
A
FMO11374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15615-RB | 1429 | CG15615-RB | 148..1131 | 8..989 | 4810 | 99.5 | Plus |
CG12164-RB | 1554 | CG12164-RB | 575..685 | 504..614 | 210 | 79.3 | Plus |
CG12164-RA | 1404 | CG12164-RA | 575..685 | 504..614 | 210 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16794395..16794701 | 338..32 | 1535 | 100 | Minus |
2R | 25286936 | 2R | 16793424..16793686 | 983..722 | 1175 | 98.1 | Minus |
2R | 25286936 | 2R | 16793740..16793890 | 727..577 | 740 | 99.3 | Minus |
2R | 25286936 | 2R | 16794091..16794183 | 502..410 | 465 | 100 | Minus |
2R | 25286936 | 2R | 16793954..16794034 | 578..498 | 405 | 100 | Minus |
2R | 25286936 | 2R | 16794242..16794317 | 412..337 | 380 | 100 | Minus |
2R | 25286936 | 2R | 7312516..7312626 | 504..614 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:45:41 has no hits.
FMO11374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:32 Download gff for
FMO11374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15615-RB | 141..1134 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:53 Download gff for
FMO11374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15615-RB | 141..1134 | 1..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:52 Download gff for
FMO11374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15615-RB | 141..1134 | 1..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:52 Download gff for
FMO11374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16793414..16793685 | 723..994 | 97 | <- | Minus |
2R | 16793745..16793888 | 579..722 | 100 | <- | Minus |
2R | 16793954..16794031 | 501..578 | 100 | <- | Minus |
2R | 16794093..16794182 | 411..500 | 100 | <- | Minus |
2R | 16794244..16794315 | 339..410 | 100 | <- | Minus |
2R | 16794395..16794700 | 33..338 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:53 Download gff for
FMO11374.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12681749..12681820 | 339..410 | 100 | <- | Minus |
arm_2R | 12681900..12682205 | 33..338 | 100 | <- | Minus |
arm_2R | 12680919..12681190 | 723..994 | 97 | <- | Minus |
arm_2R | 12681250..12681393 | 579..722 | 100 | <- | Minus |
arm_2R | 12681459..12681536 | 501..578 | 100 | <- | Minus |
arm_2R | 12681598..12681687 | 411..500 | 100 | <- | Minus |