FMO11376.5prime Sequence
938 bp (938 high quality bases) assembled on 2011-12-09
> FMO11376.5prime
CAGTCGACATGGAGATTGAAAATAAAGTCCAGTCGGCAGAGAAATGTCCT
TTGCAGATAATTCAGCACAATGACGCTACGTTTATTGGTTGCGATTCAAG
CAACCGCGATTTGGAAAAGTGCCGCAGCTGCCTCACTTCCTTCTGCCGTA
AACCCATTAAGATTTACCATAATTCCCGGAACTATCTGGCCTGCGAGGTC
CAGAGATCACAATCTATAAATTCCATAAAGTCACTGCCAGTCAAATTTCC
ATCAACACCAAATAGATCACTTAACACAGAAAAGGATTGGTCGCATGGTA
AAAGGTGTTTACAATGCGCAGCTCCCAAGTGCAAAACATCTTCCAGAAGT
TCCATTCAGTCGAAAAAACTGAAAAAAGATAAGAAGTCTCTGTTAAAGGA
ATTTGAAATATACAAAATTCCTATCATTCGACGCAAGCCTATAAAACAAG
CTGTACTAAGGGAAACCAATAAGTACCGAAGGCTTCACAACGCCAATCCC
CTGAAAATGGATGAAAAACTTTGTTCCTATGCACAGGAGTGGGCAGATCA
TTTGGCTGATCTGAACAAACTGGAAACTCGACCTAATCCTCTTTACGGCG
AGAATATTATGCGTGTCCGGAGATCCAAATTCTCCGTGGATCAAATACTG
AAACTCTGGTACCAAGAAAAATACAACTACGATTACTTAAAGCCAGGCTT
TAATTTGTACACTGGACATTTTACCCAGTTGGTTTGGAGAGAGTCAGAGT
TCCTGGGAGTGGGCGTGGCATGCGATGTTTCCTCCATTTGGATTGTGTGC
AATTACCATCCGCCTGGAAATGTAAGCGAACATTTCAGGAAAATGTCCTG
CCTAGAAAATTCCTTCTACTTAATCGGACTTGGATGCCAAGGAAACTAGA
AAATCGAACATCACAATTTAAAGCAGCTTTCTAGACCA
FMO11376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34049-RB | 967 | CG34049-RB | 11..927 | 9..922 | 4510 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2264772..2265311 | 548..9 | 2700 | 100 | Minus |
| 2L | 23513712 | 2L | 2264483..2264709 | 775..549 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 2264271..2264420 | 922..776 | 600 | 98 | Minus |
Blast to na_te.dros performed 2014-11-27 00:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAHRE | 10463 | TAHRE OSV 10463bp | 7340..7408 | 364..435 | 119 | 65.3 | Plus |
FMO11376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:33 Download gff for
FMO11376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34049-RB | 11..931 | 9..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:33:58 Download gff for
FMO11376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34049-RB | 11..931 | 9..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:54 Download gff for
FMO11376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34049-RB | 11..931 | 9..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:54 Download gff for
FMO11376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2264267..2264420 | 776..926 | 96 | <- | Minus |
| 2L | 2264483..2264709 | 549..775 | 100 | <- | Minus |
| 2L | 2264772..2265311 | 9..548 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:33:58 Download gff for
FMO11376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2264267..2264420 | 776..926 | 96 | <- | Minus |
| arm_2L | 2264483..2264709 | 549..775 | 100 | <- | Minus |
| arm_2L | 2264772..2265311 | 9..548 | 100 | | Minus |
