FMO11377.5prime Sequence
875 bp (875 high quality bases) assembled on 2011-12-09
> FMO11377.5prime
CAGTCGACATGTGGCTAAAGGCGCTTGTTCTACTGCTTTCGATTCGATAT
TTGGCGGCCACGTGCAATGTGTGTCAAAGTGATAGCAATGTCGCTTGTCA
CAGTGAAACCACTTTTTCCATCTGCTATGACGGAGTTCCATCGTATGATC
TCTTGCCATGTCCAAAGGACTTTTATTGCACGGATGGCTTTTACACTTGC
TATCAAAATGCTAATCCGGTTTGCAAAACAGAGGAGGACACTTCCACCAC
CGAGATCCAGACAACCAGTACAACCACTCCTAGCCCCATTACCACGACAA
CCACTAAGAACCCAACTACCACTGCTACCCCAATTACCACAACAACCACT
GAGATCACGACTACAGAAGCTCCGTGGAATGCCGACGATATCTGTCAGCA
ATACACTAAAAACACCTTTTTCGAAAACGAAGATGATCCCACCTGCACCA
CTTTTATAACCTGTACAGTTGATAGCGACGGAACGCATTCGACAAAAGTC
ACTTCATGCAAGGCTAATCAGTATTTCAGTACCAGCTTAAAGGTTTGTAC
CGCCACAAAGCCGGATGGATGCGTGGAGACGACAACCACTATAGCCACCA
CTACCCCAACCACCACCACCGTGACCACAACAGCGGCGAGTACCACCACA
GCGGAACCCTGGAGTGCGGAGAAAACCTGCCTGACTGTCTCTAAGACCAC
TTTGTTTCAAAACCAAGACGACCCCACCTGCACCACGTACCTATATTGTT
ATTTTATCAATGGATCGGCAACAGCTTTGATAAAGAACTGTAAGACCAAC
CAATATTTTGATGCTTCCTTGAAATCGTGCAGCGAAAACAAACCGGATTA
TTGCACCGCAAGCTTTCTAGACCAT
FMO11377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42494-RC | 1205 | CG42494-RC | 277..1125 | 9..857 | 4245 | 100 | Plus |
| CG42494-RB | 1337 | CG42494-RB | 409..1257 | 9..857 | 4245 | 100 | Plus |
| CG42494-RA | 937 | CG42494-RA | 9..857 | 9..857 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3185633..3185952 | 132..451 | 1600 | 100 | Plus |
| 3L | 28110227 | 3L | 3186012..3186299 | 452..739 | 1440 | 100 | Plus |
| 3L | 28110227 | 3L | 3186349..3186469 | 737..857 | 605 | 100 | Plus |
| 3L | 28110227 | 3L | 3185480..3185578 | 35..133 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:45:58 has no hits.
FMO11377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:33 Download gff for
FMO11377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42494-RB | 409..1261 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:34:04 Download gff for
FMO11377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42494-RA | 9..861 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:57 Download gff for
FMO11377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42494-RA | 9..861 | 9..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:57 Download gff for
FMO11377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3186349..3186473 | 737..862 | 98 | | Plus |
| 3L | 3185396..3185422 | 9..35 | 100 | -> | Plus |
| 3L | 3185481..3185577 | 36..132 | 100 | -> | Plus |
| 3L | 3185634..3185952 | 133..451 | 100 | -> | Plus |
| 3L | 3186012..3186296 | 452..736 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:34:04 Download gff for
FMO11377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3186349..3186473 | 737..862 | 98 | | Plus |
| arm_3L | 3185396..3185422 | 9..35 | 100 | -> | Plus |
| arm_3L | 3185481..3185577 | 36..132 | 100 | -> | Plus |
| arm_3L | 3185634..3185952 | 133..451 | 100 | -> | Plus |
| arm_3L | 3186012..3186296 | 452..736 | 100 | -> | Plus |
