FMO11380.5prime Sequence
1056 bp (957 high quality bases) assembled on 2011-12-09
> FMO11380.5prime
CAGTCGACATGTTAGCGCTTTGCTGGCTTTGTGGCCTGGCCCTTAGTTGT
TGGATGGTTGGCATTCGTGGTGAGGTGGCTCTAAATCAGGAGGATTACAA
CAAAACCTGGATCTACATGCCCAATGGACAGGGTAAGCCTGAGGTGGCCT
ATCTGGTGGAACCTCCGCCCGAAAACCGCATCAATCTGCCACAGCTCATC
AAGTTCGAGCTGTACGGAAGCGACTCCAGTTCCAGTGCTGATTTCTGGAT
AGATGAGAATAACTTTGAGTTTCCGCAGCGCCACAAGCGAGACACCTGGC
AGGAGATGGCGGAGAAATTCAATCCGGAACTGGACACCAAGATACTCGTT
CACGGCTGGAAGTCCAGCACCATGAGCAATTCGATTCAATCGATTCGTGG
TGCCTATATCGAACGTGGCCAGGTGAACGTGTTCGCCATCAACTGGATGG
ATCAGGCGGATAATATATACTATCTAACACCGGCGCGATATACGGTTCAG
GTGGGACGGGCGGTGGCCAAGCTAATTGATCTGCTGGTGGAGGAGAAGGA
TGCGGATCCGAATAGGATCCATCTGATTGGCCACAGTCTGGGCGCGCACA
TCATGGGCTATGCTGGTTCGTACACTAAGTACAGGGTAAACCGCATCACT
GGCTTGGATCCAGCTCGTCCCGCTTTCGAGGATTGCATTGGTCCGGAGAA
TCACTTGGACGACACGGACGCCAACTTTGTGGATGTCATACACAGCTGTG
CCGGATACCTGTGCTTTCGCAACCCATCGGCATGGTGGATTTCTATCCCA
ATGGCGGTGGACCACCGCAACCAAGCTGCAAGGAGCTGTCGCAGATTTTC
ACTGGTTTGCAGTCATGGACGTTCATATGAATATTACGCGGAGTCTATTA
ACTCGCCCAAAGGATTTTACGGTGTTCCCTGCTCTGGACTGAATGAACTC
AAGGGAAAAATTGCACCGGCGCAAGATCCTATGGGTGATCCAGTTTCTTC
GAGAAGCCTCGCGAATAATTCTTTGTGAAGAACGGCCCAATCAACCCGAC
CTACGC
FMO11380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7367-RD | 1454 | CG7367-RD | 283..1328 | 9..1056 | 4860 | 98.2 | Plus |
| CG7367-RB | 1493 | CG7367-RB | 322..1367 | 9..1056 | 4860 | 98.2 | Plus |
| CG7367-RC | 1265 | CG7367-RC | 143..1139 | 58..1056 | 4615 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8027308..8027941 | 851..219 | 3075 | 99.4 | Minus |
| 2L | 23513712 | 2L | 8028014..8028177 | 220..57 | 820 | 100 | Minus |
| 2L | 23513712 | 2L | 8027062..8027237 | 1031..857 | 565 | 94.4 | Minus |
| 2L | 23513712 | 2L | 8028643..8028691 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:46:15 has no hits.
FMO11380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:35 Download gff for
FMO11380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7367-RB | 317..1367 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:34:12 Download gff for
FMO11380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7367-RB | 317..1367 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:05 Download gff for
FMO11380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7367-RB | 317..1367 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:16:05 Download gff for
FMO11380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8028643..8028696 | 1..57 | 92 | | Minus |
| 2L | 8027040..8027241 | 852..1056 | 92 | <- | Minus |
| 2L | 8027308..8027939 | 221..851 | 99 | <- | Minus |
| 2L | 8028014..8028176 | 58..220 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:34:12 Download gff for
FMO11380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8028643..8028696 | 1..57 | 92 | | Minus |
| arm_2L | 8027040..8027241 | 852..1056 | 92 | <- | Minus |
| arm_2L | 8027308..8027939 | 221..851 | 99 | <- | Minus |
| arm_2L | 8028014..8028176 | 58..220 | 100 | <- | Minus |
