FMO11381.5prime Sequence
1104 bp (1024 high quality bases) assembled on 2011-12-09
> FMO11381.5prime
CAGTCGACATGACTACCTATACAAGGAAATACTGGACACTTGTACTCTAC
CTCTTTTCTTTTTCACTTTCCTTGATCGGCGGCTCCTTCATATTGCCAGA
GAATGACCCTCCCACAACGGCGCCAAAGTTCTTATCCAGAGGTCACTTGT
ACAAGGTCATCGTGGGGGAGACCATCGAGCTGCCCTGCAAAGTACAGAAC
CTCGGCTCCTTTGTGCTCCTGTGGCGAAAGGGCTCATCCGTGCTCACAGC
CGGACATTTGAAAATAACAAGGGATCAGCGCTTTAAGATAGTGGGCGACT
ATAACTTGCAGATCAATGGAGTAAAGACTCAAGACGCTGGAGATTATATA
TGCCAGCTGGGAGATCAGGAGAACCGTGACCAAGTTCACACGGTGGAAAT
CTTGGTTCCGCCCACCCTGAGGGCTCTGCCTCATAACGGCCAAGTGACTG
CCCGGAAGGGAAGCACCGTCACCCTGGAATGCAAGGCGTCTGGTAACCCG
GTGCCCACCATATTTTGGTTCAAGAAGGATGTGTTTTCCGGGCCAACACA
CCTGTCGGATAGCTCTACACTCATATTGGAAAACGTGGACAGGCACCACG
CAGGCACATATCAATGCTCAGCCGACAACGGGGTTAAAGATCGCGTATCC
ATGGACATTCAGTTGACCATTCTCTCGCCCCCCGAAATAACGGTAGAGAA
ATCTTGGGTCCACGCATCTGAGGGATACGATGTGGAGCTCGTTTGCATAG
TTCATGGAGATGTAAACTCAGAAATGCTGTGGTACCAGAACTCATTTCTA
CTTGATGCTACCGATCGGAGATCTATGTATCCACGAGATGATAGGTACAG
CCTGATTATCCCGGAACTTCCAGCCAACGGATTTCGGAAATTATAGCTGT
GTTGCGGATAATGCTTTGGGGAGAACAAAAAAGTATTATTGAAGTGTCTG
GACGACCTGTCTGCTGACTTCATATCTCCCGCGTTGAGTGAATTCCTAGA
TCACTACAACTTGACGTGACAATTGATCAATACGGCGCTTGATGAGAATT
AGCTTGTTGTATTGCGTTTTGTGTATGAAATGATACTAACGGCACTTGGC
CAAT
FMO11381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7166-RC | 2073 | CG7166-RC | 175..1247 | 9..1079 | 5045 | 98.4 | Plus |
| CG7166-RB | 3466 | CG7166-RB | 175..1247 | 9..1079 | 5045 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21623222..21623549 | 405..78 | 1640 | 100 | Minus |
| 3L | 28110227 | 3L | 21622891..21623161 | 675..405 | 1355 | 100 | Minus |
| 3L | 28110227 | 3L | 21622404..21622648 | 1018..774 | 1040 | 97.6 | Minus |
| 3L | 28110227 | 3L | 21622725..21622822 | 773..676 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 21623690..21623758 | 79..11 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:11:47 has no hits.
FMO11381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:35 Download gff for
FMO11381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7166-RB | 175..1238 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:04 Download gff for
FMO11381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7166-RB | 175..1238 | 9..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:05 Download gff for
FMO11381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7166-RB | 175..1238 | 9..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:05 Download gff for
FMO11381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21622350..21622648 | 774..1069 | 95 | <- | Minus |
| 3L | 21622725..21622822 | 676..773 | 100 | <- | Minus |
| 3L | 21622891..21623160 | 406..675 | 100 | <- | Minus |
| 3L | 21623222..21623548 | 79..405 | 100 | <- | Minus |
| 3L | 21623691..21623765 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:04 Download gff for
FMO11381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21615991..21616260 | 406..675 | 100 | <- | Minus |
| arm_3L | 21615450..21615748 | 774..1069 | 95 | <- | Minus |
| arm_3L | 21615825..21615922 | 676..773 | 100 | <- | Minus |
| arm_3L | 21616322..21616648 | 79..405 | 100 | <- | Minus |
| arm_3L | 21616791..21616865 | 1..78 | 94 | | Minus |
