Clone FMO11382 Report

Search the DGRC for FMO11382

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:82
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10804-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11382.5prime Sequence

1079 bp (1001 high quality bases) assembled on 2011-12-09

> FMO11382.5prime
CAGTCGACATGTCCGACGCCTTCGACGAGTCCTCGGAACTGGAACAGGAT
CCGCCGCCCTTCGGATCCGAGGCTAGCACTTCGAAGGCCAAGGCCGAACT
GGTGGCCATTGCGACTGCCTCTGCGGATCAGCAGGATATCGTCGAGGGCG
AGAAGGAGGGCGAGGAGCGAGAGAGTTGGGACAGCAAGATTATGTTCTTG
CTGGCCACCATCGGCTATGCCGTTGGCCTGGGAAATGTGTGGCGTTTTCC
CTATTTGGCGCAGAAGAATGGCGGCGGTGCCTTCCTGGTGCCCTACTTCA
TAATGCTGTGCATCCAGGGCATACCGATCTTCTATCTGGAACTGGCAATT
GGCCAGCGACTGCGAAAAGGAGCCATCGGCGTTTGGAGCCAAGTATCGCC
GTATCTAGGCGGCATTGGTATCTCATCGGCGGTGGTCAGCTATATAGTGG
CGTTGTACTATAACACTATCATTGCCTGGTGCCTGATCTATCTGCTACAC
AGTTTCGAATCGCCATTACCCTGGGCGGACTGTCCGACGAGGTTGTATAA
GAATTTTACCTACGACCACGAACCGGAGTGTGTGGCCTCATCTCCGACGC
AGTTCTATTGGTATCGCACCACATTGCAGTGCTCGGAGAGTGTGGATATG
CCGGAGAACTTCAATTACCACATGGCCATTGCGCTAATTGTCTCCTGGTT
TTTGGTCTACATCTGCATGGTCCAGGGCATCACGTCATCCGGCAAGATCG
TCTATATGACGGCCATATTCCCCTATGTGGTGCTTATAATATTTTTTTTT
TCGGGGCATCACCTTGAAGGGTGCTGCAGATGGGGTGGCACACTTGTTTA
CCCCACGATGGGAAACTCTATTGGATCCAGTCGTTTGGCTGGAGGCCGGC
ACACAGATCTTCTCTCGCTGAGATGGCTTTGGCCAGTCTGATAGCCTTCA
GTTCGTACATCCGGCGAATAATAATTGCTACAGGGCACGCCATAACTCGT
ATCGCTCACAACTGTGCACATCATCTTTTGCGGATGGTGTATTCTCTTCA
TTGTGTAAGGCCACGGCAACCTTTGATAG

FMO11382.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10804-RD 4353 CG10804-RD 476..1553 8..1077 4900 97.8 Plus
CG10804-RC 4536 CG10804-RC 885..1962 8..1077 4900 97.8 Plus
CG10804-RB 4127 CG10804-RB 476..1553 8..1077 4900 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3479555..3480350 1009..214 3620 98.6 Minus
X 23542271 X 3480417..3480628 219..8 1045 99.5 Minus
Blast to na_te.dros performed on 2014-11-27 00:40:54 has no hits.

FMO11382.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:03 Download gff for FMO11382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10804-RC 184..1271 1..1079 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:24 Download gff for FMO11382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10804-RA 468..1555 1..1079 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:12 Download gff for FMO11382.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10804-RB 468..1555 1..1079 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:12 Download gff for FMO11382.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3479477..3480349 215..1079 97 <- Minus
X 3480422..3480636 1..214 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:24 Download gff for FMO11382.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3373510..3374382 215..1079 97 <- Minus
arm_X 3374455..3374669 1..214 98   Minus