FMO11383.5prime Sequence
497 bp (497 high quality bases) assembled on 2011-12-09
> FMO11383.5prime
CAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGGGCAAACTG
CGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAAAAGAAGAT
CACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAAAATGTGCT
CCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGTATGCCAGC
TTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTGCTGACACT
GGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTTCGGCAGCG
TCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACTTTATCCTG
GATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAAAAGAACGT
ACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGACGAAGCCGTTG
AGGGCACTTTAAGAGACATTGGACTCCTCGCAAGCTTTCTAGACCAT
FMO11383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:41:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1sigma-RC | 795 | CG5864-RC | 146..616 | 9..479 | 2355 | 100 | Plus |
| AP-1sigma-RB | 1181 | CG5864-RB | 146..616 | 9..479 | 2355 | 100 | Plus |
| AP-1sigma-RA | 1079 | CG5864-RA | 146..576 | 9..439 | 2155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23959031..23959212 | 11..192 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 23959456..23959594 | 300..438 | 695 | 100 | Plus |
| 3R | 32079331 | 3R | 23959278..23959390 | 189..301 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 23960896..23960939 | 436..479 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:41:00 has no hits.
FMO11383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:03 Download gff for
FMO11383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1sigma-RB | 143..618 | 9..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:30:29 Download gff for
FMO11383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1sigma-RB | 146..621 | 9..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:16 Download gff for
FMO11383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1sigma-RB | 146..621 | 9..484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:16 Download gff for
FMO11383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23959456..23959593 | 300..437 | 100 | -> | Plus |
| 3R | 23960898..23960944 | 438..484 | 95 | | Plus |
| 3R | 23959024..23959210 | 1..190 | 97 | -> | Plus |
| 3R | 23959280..23959388 | 191..299 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:30:29 Download gff for
FMO11383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19785178..19785315 | 300..437 | 100 | -> | Plus |
| arm_3R | 19786620..19786666 | 438..484 | 95 | | Plus |
| arm_3R | 19784746..19784932 | 1..190 | 97 | -> | Plus |
| arm_3R | 19785002..19785110 | 191..299 | 100 | -> | Plus |
