FMO11387.5prime Sequence
1134 bp (976 high quality bases) assembled on 2011-12-09
> FMO11387.5prime
CAGTCGACATGCCCACAACCACGTCCACATCCACACCCACACCCGCACCC
ACACCAATATCCCTGCCCGCGACCCGTTCCCGGGCACAGGATAGGGTTTC
TTTCGCCCAGGCGGGTCGGGTGGCTAGGAGCTTTATGTACTGGCGGCACA
TGCGTTTCCAGCAGCGCACGCAACAGGAGCAGGAGGTGCGTAGGCGGGAG
CTGATGAGCACGAAGTCAAGTGCCGAGAACCTGGCCACTGGAGCACCCAG
TGCCGCCACCACCAGGTTGATCGGGAATGGGAAAGTGCGCCAGATGTTCG
ACGAGCGCCGCCGCGGGGCGGGCATTGATCGCAGCAATCCCCTCAAGCCG
ATCGGCACTCTGCCCTCGCCACCCGCCCAAACAAAATCTCGCCCGCAGCC
CCCAATGCAGCGTCTCGTCAAGGGCGTGGCCGACTTGACCATGCGGGATG
CACCAAATGCACCAGGCAGGAGGATCACTAGTGACAGCAATAACAATAAG
TTCGCCACGCCCCGCGGGACTTTGAATCGCAACCTTAAGCCCGTGGTCAC
CCGCAAGACACCGCCGGCCCAGGAGACCACGCTCCACCAACGTTCTCCCG
CGCCACAACGCAGTCCCAAGATTCAGGCGACCCAACGAGTAAGTGGAGGA
ACCGGTGCTGCCCCGACAGCCGGTCGTCTTTCGCCACCATTTGTTCGACG
GGCGGAACCCAAATCACTAGTTAAAAAAGTCAACATGGACACAACGACTG
CAATCCCAGAGGGCACCGCTTTATGCCGCTACTGCGGACGCCACTTCAAC
ACGGATCGTCTGGCGAAGCACGAGGAGGTGTGCCAGCGCATGCTGACCAC
CAAACGCAAGATATTCGATGCCTCCAGCAGCGGATCGAGGGCACCGAGGC
CGCGGCGTTCAATATGAAAGTCGAAAGGCAATCGCATCCGTTCAACTTAC
AGTAGTGCTGCCCAGCAAAAGGTCTGACCCACTGGAGTGAAAAAGAACAA
CTGGCGTAAGAAGCACGAAGGAACTTTCATTTCAGTCGAATTAAAGCCGC
CAACCAGGTGAAGGCGCCACCTTGACGCGCCGCCGCAAGTTTGACGACCC
TCCACACACGGCAAAGTTCGGAAAAAATCCAAGA
FMO11387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42675-RE | 1474 | CG42675-RE | 173..1249 | 8..1091 | 4975 | 97.9 | Plus |
| CG42675-RG | 1448 | CG42675-RG | 288..1223 | 149..1091 | 4270 | 97.6 | Plus |
| CG42675-RF | 1834 | CG42675-RF | 671..1609 | 146..1091 | 4270 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5817516..5818068 | 150..702 | 2765 | 100 | Plus |
| 3R | 32079331 | 3R | 5818248..5818529 | 737..1018 | 1165 | 95.8 | Plus |
| 3R | 32079331 | 3R | 5816758..5816899 | 8..149 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:12:21 has no hits.
FMO11387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:39 Download gff for
FMO11387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RE | 168..1249 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:22 Download gff for
FMO11387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RE | 168..1249 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:20 Download gff for
FMO11387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42675-RE | 168..1249 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:20 Download gff for
FMO11387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5818249..5818595 | 738..1091 | 94 | | Plus |
| 3R | 5816753..5816899 | 1..149 | 97 | -> | Plus |
| 3R | 5817516..5818067 | 150..701 | 100 | -> | Plus |
| 3R | 5818152..5818187 | 702..737 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:22 Download gff for
FMO11387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1642475..1642621 | 1..149 | 97 | -> | Plus |
| arm_3R | 1643238..1643789 | 150..701 | 100 | -> | Plus |
| arm_3R | 1643874..1643909 | 702..737 | 94 | -> | Plus |
| arm_3R | 1643971..1644317 | 738..1091 | 94 | | Plus |
