Clone FMO11388 Report

Search the DGRC for FMO11388

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:88
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG43085-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11388.5prime Sequence

791 bp (791 high quality bases) assembled on 2011-12-09

> FMO11388.5prime
CAGTCGACATGAAGGCAGTTACTTCAAGAGTGTTGGGTTCGATCCTAGTG
TTATTATTGATACATTTAACATCAGCAAAAGAAGCGGAGGTTCACTTAAC
AAATCCTCCAACAGAATGCAGACTGGTGTGTAATCCAGGGTATCATATCG
TGGTTAAAAAGGGTACCTTGTATCATAATGGTAGGAAGCTTGACGATAAT
GCACGGTATGCGCCGAAGATGGCGTGTGATTTGGAGAACAGTTGCAACTT
TAAATTTACGCCACAAACATTAAGTTACATGAATACAGCAATTAATGTAG
GCACACAACTAACTATTAATTACGACTGCAAGCGGGATAACTTCCAAGGA
GATCCGAGAAGGATAACAGATTATACGAAAACGCAAGGATGTCCGCAAGA
CTCTTTTGTTCAGAAACACGTCGCATATTTTAACGATGAAAATATTGCTC
CCTAGAGGGATACACCTGTCGCGCAAAGGGAAAGGGAAATGATTGCCATG
GGCGTATGTGCTCAGGTCAAACGTTTTAGGCAAAACAACCCAAGAACGCC
CATCGATCCACATCTTGGCACAGTGTACTTGATATTTGACAATAGAACAA
GTAAAAATGATTTCATGCCGAGTCCTGATGTTAGAAAGTGCCAACTTAAG
CCCAATTCTCTGACCAAGACATACAAGTATGATTGCGAGAGGAAAGCGGA
TAAATGGACATGTACTTTTGCCAGCAAGGGAAGGGACTTGGCCATAAATG
ACAAGATTACAAGTCACTTAGGAGCAAGCTTTCTAGACCAT

FMO11388.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG43085-RB 1193 CG43085-RB 298..1062 9..773 3810 99.9 Plus
CG43085-RA 925 CG43085-RA 30..794 9..773 3810 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17645617..17646321 773..69 3510 99.9 Minus
3L 28110227 3L 17646381..17646440 68..9 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:12:29 has no hits.

FMO11388.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:39 Download gff for FMO11388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43085-RA 23..797 1..776 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:26 Download gff for FMO11388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43085-RA 23..794 1..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:24 Download gff for FMO11388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43085-RA 23..794 1..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:24 Download gff for FMO11388.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17645617..17646321 69..773 99 <- Minus
3L 17646381..17646447 1..68 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:26 Download gff for FMO11388.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17638717..17639421 69..773 99 <- Minus
arm_3L 17639481..17639547 1..68 94   Minus