FMO11389.5prime Sequence
1114 bp (997 high quality bases) assembled on 2011-12-09
> FMO11389.5prime
CAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTTGTATGGAC
GAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGATCCTGTGCT
CGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTGTACCGAAC
GTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCGTTTCCTGC
GTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGCGAGCAGAG
CTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCCGGAAAACC
AAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAATAAACCAG
AAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAAATGACAAA
AACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACTCCAAGCGA
ATCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCACCCTGCAT
CCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATGATCCCAAA
GGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGGCTACTACA
ACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGTTAAGGACC
CACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGCACTTATAT
GCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAGCAAGCCAG
CGCACAAGTGTTTCCACTGCTCGAAGGCTTTCATGCGTAAAGATCACCTT
AAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCCTGCAGCCA
GTGCTCAGCGGTATTTATCGAACACGTTCAGCTGGAAATCCATCGCAGAG
AGCACAAACAAAGGCCGGGCTCTTCAAATCGGAGTCCCCGAGGATCCTGA
CCTCGGACGACGCGATCAGGCGCAGATCTAAAACCAAAGTGGACTAGACA
CTCATGGCACGTGCCAGCAATCACTATGCTAAGCGGCAAGCTTTCTAGAC
ATCGTTTGGCCGCGCGGCCAGGTAGTGTATAATCCTAAATCATACTTCTA
TCCTATCACTTAGC
FMO11389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2678-RB | 2003 | CG2678-RB | 234..1266 | 9..1032 | 4800 | 98.4 | Plus |
| CG2678-RA | 1811 | CG2678-RA | 234..1266 | 9..1032 | 4800 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7914084..7914637 | 9..562 | 2755 | 99.8 | Plus |
| 3R | 32079331 | 3R | 7914790..7915228 | 561..996 | 1920 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:12:39 has no hits.
FMO11389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:40 Download gff for
FMO11389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RB | 228..1241 | 9..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:31 Download gff for
FMO11389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RA | 234..1247 | 9..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:27 Download gff for
FMO11389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RA | 234..1247 | 9..1014 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:27 Download gff for
FMO11389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7914084..7914637 | 9..562 | 99 | -> | Plus |
| 3R | 7914792..7915255 | 563..1016 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:31 Download gff for
FMO11389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3739806..3740359 | 9..562 | 99 | -> | Plus |
| arm_3R | 3740514..3740977 | 563..1016 | 96 | <- | Plus |
