Clone FMO11390 Report

Search the DGRC for FMO11390

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:90
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42717-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11390.5prime Sequence

314 bp (-89 high quality bases) assembled on 2011-12-09

> FMO11390.5prime
CAATCGACATGCGGAATAGCACTCTGATTCTCATCGCCGTCGTTATGACT
GTTTGCATTTTTGCGAATGTAACTGGAGTAACTCGATGCAAGGGAAAGCC
CAAGGATTCAAAGTGTGCCGGGAATCTCGATGGCGGTAACAATCGCAAAA
GCAAATGCAAGAAATCGGCCAACAAAAATATGTGGCACTACAATACACGG
ACAAAAAACTGCACACAATTCAACTACCTAGGATGTGGTGGCAATAATAA
TCGCTGGTGCACAAAAGCATTATGTGAAGCCTGTCGACGACCAAAAGCAA
GCTTTCTAGACCAT

FMO11390.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG42717-RA 373 CG42717-RA 34..319 9..294 1415 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16032816..16033007 294..103 960 100 Minus
3L 28110227 3L 16033064..16033157 102..9 455 98.9 Minus
Blast to na_te.dros performed on 2014-11-27 20:12:47 has no hits.

FMO11390.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:41 Download gff for FMO11390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42717-RA 21..315 1..300 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:34 Download gff for FMO11390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42717-RA 30..324 1..300 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:31 Download gff for FMO11390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42717-RA 30..324 1..300 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:31 Download gff for FMO11390.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16032810..16033007 103..300 98 <- Minus
3L 16033064..16033161 1..102 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:34 Download gff for FMO11390.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16025910..16026107 103..300 98 <- Minus
arm_3L 16026164..16026261 1..102 95   Minus