FMO11392.5prime Sequence
845 bp (845 high quality bases) assembled on 2011-12-09
> FMO11392.5prime
CAGTCGACATGCATTCCAAGGGAAATAACCAGTGCTTACTGTTCACCTTG
GTTTTGGGCTTACTGGGAGGCGCGGGACATTGTTATGTAGTCGAACCACC
TATCGTTCACGTGGAAATGGAAAAAGCCGGCATGCACAGGACCCTTAATT
ACCGTCTGCGGTTCGATATACCCTTGGTGGGCAAGGACTGCGAGTATGCG
CTGGTCCAGGATTTGCCCGCATCCGTTTACATAAGCACAGACGAACTGGA
TGACCTGCAGCGTTTGAAGAGGTTAAATGCCATCTATCCTAAGTTCGTCA
ACATTGAAGTAGCCACGGAACGGGCGCAGCCCTTCTCCGTTTTACTGCGC
GGTACACCAAAGATTACGGAATCGCTGGCTCTGCCCGTGCATTTTCGCTA
CCATGCCCCCAGTGATAAGCGTTTGGCGGCAACGGTGGCCATACCCCTAC
TCGAGCTCTATCTCAACTGCCCGATGGCTGATAGTGCGCTCATCGAAAAC
GAGTTGGTTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCGCCGGAAAG
CCGTTTCGACGAGAACCATATCAAGGATGGCCAACCCACGACCATGGCTA
ATCTGGAGCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCCAGCTAAAG
ATGCCGCTGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCCTACGGTCC
AGTTCTGTGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCTGTGGACCA
TCATCCACTCGATGGCCAACACGCGACGCATCAATCAGCGCCTCAACGAG
CAGCGACTTCTGCAGCAAAAAGTCAAGGCAAGCTTTCTAGACCAT
FMO11392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30381-RB | 1177 | CG30381-RB | 33..851 | 9..827 | 4080 | 99.9 | Plus |
| CG30381-RC | 1195 | CG30381-RC | 33..869 | 9..827 | 3890 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7929984..7930390 | 827..421 | 2020 | 99.8 | Minus |
| 2R | 25286936 | 2R | 7930452..7930601 | 421..272 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 7930660..7930795 | 272..137 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 7930853..7930984 | 140..9 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:12:58 has no hits.
FMO11392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:42 Download gff for
FMO11392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30381-RB | 33..854 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:39 Download gff for
FMO11392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30381-RB | 33..854 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:37 Download gff for
FMO11392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30381-RB | 33..854 | 9..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:37 Download gff for
FMO11392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7929981..7930389 | 422..831 | 99 | <- | Minus |
| 2R | 7930452..7930600 | 273..421 | 100 | <- | Minus |
| 2R | 7930660..7930792 | 140..272 | 100 | <- | Minus |
| 2R | 7930854..7930984 | 9..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:39 Download gff for
FMO11392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3817486..3817894 | 422..831 | 99 | <- | Minus |
| arm_2R | 3817957..3818105 | 273..421 | 100 | <- | Minus |
| arm_2R | 3818165..3818297 | 140..272 | 100 | <- | Minus |
| arm_2R | 3818359..3818489 | 9..139 | 100 | | Minus |
