FMO11393.5prime Sequence
290 bp (290 high quality bases) assembled on 2011-12-09
> FMO11393.5prime
CAGTCGACATGTCTCCTAAGTTCGCACTTGCAGTTCTGCTCCTCAGCTGC
GTTCTCCTAGGACTGGCCAATGCCCAGTATAACAGGCGCTATCAGACTGG
GCCTAACCGACAAAAAATTGGGACTCGAATGAATGCGGACGGCCCTTTGC
CGCCAAATTTCCCCCCTCCGGCTGATAATGCTGGTGGCAGTGATGTCCCG
GCCAACGTGGATTGCATGCCCAATCTATTGGCTAGTAACACCCTTGATAC
CAGGAAACCTAGGCCCAAGCATGCAAGCTTTCTAGACCAT
FMO11393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42792-RA | 397 | CG42792-RA | 7..270 | 9..272 | 1320 | 100 | Plus |
| CG42792-RB | 468 | CG42792-RB | 39..302 | 9..272 | 1320 | 100 | Plus |
| CG44475-RA | 343 | CG44475-RA | 18..260 | 9..272 | 785 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15865095..15865250 | 272..117 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 15865316..15865423 | 116..9 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 15882866..15882974 | 272..164 | 440 | 93.6 | Minus |
| 2L | 23513712 | 2L | 15883066..15883173 | 116..9 | 435 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:13:06 has no hits.
FMO11393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:43 Download gff for
FMO11393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42792-RA | 1..267 | 9..276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:44 Download gff for
FMO11393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42792-RA | 1..273 | 5..276 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:40 Download gff for
FMO11393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42792-RB | 39..305 | 9..276 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:40 Download gff for
FMO11393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15865091..15865250 | 117..276 | 98 | <- | Minus |
| 2L | 15865316..15865423 | 9..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:44 Download gff for
FMO11393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15865091..15865250 | 117..276 | 98 | <- | Minus |
| arm_2L | 15865316..15865423 | 9..116 | 100 | | Minus |
