Clone FMO11394 Report

Search the DGRC for FMO11394

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:94
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG33228-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11394.5prime Sequence

671 bp (671 high quality bases) assembled on 2011-12-09

> FMO11394.5prime
CAGTCGACATGTGTGCGGCCCTCTTACGAAGTGTTAAATTGGTTTATTTA
CGGCCAATACTAGCTAAACCGAATTTCCAGCTCTTACACACCAGCAGCGT
GCTCCGCAAATGGCGGAATGCATCCTCCGGCGAAGTGGAACGGAAGCTCC
TCTTTGGCGACAGGCTACCAGATAACTATAAACTGATTTACCGGGCCCCT
ATCGAGAGCTACGTGACCTGGACGAAGAATATATCCACTGCCACGACCAC
TGTACTTGCTGCGGTGGCCGCCTATCACTATGCCACAACCATAAACTACC
TGGATATGGTCCAGAAAATGGACATAGCCATTCTGGTGTCCCAGGAATCA
GATCTGTACTACTTTGTGGGTGGATTTCTGCTTATAAACCTGGCGATTCG
AGCTTTTGTCGCCAAATATCCACTGAGAATATACAAGAGCTCGGAAAAAT
ACGTGTCTGTCTATGGGTCCCAACTACCCATTGGAACTGTAAAACACTAT
TTTGAACGCGGTCAAATAGCTGAATACAAGAATTTTTTAAATCCCTGGAG
CCACATTATGTACAAACTGGGCAACCGCTCCTCAATGCTTCTGGTTGATT
ACTTCAAGACCCCCTCGGAGTTCCACCAACTGTTCGCGACCAAACAAGAA
ACGGCAAGCTTTCTAGACCAT

FMO11394.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG33228-RC 737 CG33228-RC 46..690 9..653 3210 99.8 Plus
CG33228-RB 809 CG33228-RB 100..744 9..653 3210 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24668737..24669096 448..89 1800 100 Minus
2R 25286936 2R 24668476..24668680 653..449 1010 99.5 Minus
2R 25286936 2R 24669152..24669231 88..9 400 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:11:55 has no hits.

FMO11394.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:36 Download gff for FMO11394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33228-RB 94..752 1..662 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:08 Download gff for FMO11394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33228-RB 94..752 1..662 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:08 Download gff for FMO11394.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33228-RB 94..752 1..662 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:08 Download gff for FMO11394.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24668468..24668680 449..662 97 <- Minus
2R 24668737..24669096 89..448 100 <- Minus
2R 24669152..24669237 1..88 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:08 Download gff for FMO11394.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20556675..20556760 1..88 95   Minus
arm_2R 20555991..20556203 449..662 97 <- Minus
arm_2R 20556260..20556619 89..448 100 <- Minus