Clone FMO11396 Report

Search the DGRC for FMO11396

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:113
Well:96
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG32457-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11396.5prime Sequence

515 bp (-87 high quality bases) assembled on 2011-12-09

> FMO11396.5prime
CAGTCGACATGCGTCGCACTTGGGTCCTGTTTTACTTATTCCTAATTGGG
TTGGCATTGGTAAAGACCACACCGAAAGAACTTCACTCAGAATCGATTTT
TGAAGATGACGTCGCTCTAAGGTCCAAGTCAAGTAAAGCTGATGCTCTGC
TTACAAAAACTACAGCAAAAGCGTCAGCATCAAATTTATTCTTTAAAGTC
ATTACAACAACCCGACCACCTGTGACAATCAGGCGCGTTGTAGCCAAGTC
AAAGGGTAAGGATCCTGAAAGAACTGACCTCCACCGCAAGCACCTCACAC
ATCACAAACATCACTCAAAAAACAAAAAAAAGAATCCACATAATCGTGCC
GAAGCGAATCGAAACAAGGATCATAGTCCCCATGATCCCCACAAAAACCT
GAAAAGAAAGGCAGAGGCACTCCCTAAGTCAAATCAGAATATAAATGGCA
CTACTTCTCTGGAAGCCAAGAGTACGTCTTTAAAAGATGTACATAAGGCA
AGCTTTCTAGACCAT

FMO11396.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32457-RB 621 CG32457-RB 28..516 9..497 2415 99.6 Plus
CG32457-RC 555 CG32457-RC 152..450 199..497 1480 99.7 Plus
CG32457-RC 555 CG32457-RC 28..151 9..132 620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22987669..22988157 9..497 2415 99.6 Plus
Blast to na_te.dros performed on 2014-11-27 20:11:58 has no hits.

FMO11396.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:37 Download gff for FMO11396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32457-RB 25..520 3..501 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:11 Download gff for FMO11396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32457-RB 25..520 3..501 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:10 Download gff for FMO11396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32457-RB 25..520 3..501 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:10 Download gff for FMO11396.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22987666..22988161 3..501 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:11 Download gff for FMO11396.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22980766..22981261 3..501 98   Plus