FMO11402.5prime Sequence
443 bp (443 high quality bases) assembled on 2011-12-09
> FMO11402.5prime
CAGTCGACATGCAGCTTACCCGCCTTTTACTGAAGCCTCGAGCCTCGGAA
GTATTGACCGCATATTTGAAACAATGCCATGAGCCACCTTGGACATCATA
TTTCGTGAAGTTTCACGATGTGGCCAACGATCAGAGGGGAATGTCTCACT
TTAATTGGACCCTGGAAAACGGAACCAACTATCACATTCTTCGCACCGCC
TGTTATCCCTATATGAAGTACCACTGTAGCAAGAGGGAGGTGCAGGATCT
TTGGCTGGAGGACAAGTTCTTTCGCTTCCTTAAGGTGATTAATTTGGGCT
TACCAATGCTCTTCTATGGACTGGCTGCCATCCGTCTAATTAGTCACACC
GAGATCGTTCATGTCAGCGAGACGGTAAAAGTTCCCATATACTTTCTATA
TCCTGAGGACAAGGGCTCAAGCTTTGCAAGCTTTCTAGACCAT
FMO11402.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34148-RB | 595 | CG34148-RB | 99..515 | 9..425 | 2085 | 100 | Plus |
| CG34148-RC | 587 | CG34148-RC | 99..507 | 9..425 | 1820 | 95.7 | Plus |
| P5CDh2-RD | 2291 | CG33092-RD | 197..476 | 298..20 | 960 | 90.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21878232..21878421 | 298..109 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 21877950..21878078 | 425..297 | 645 | 100 | Minus |
| 3R | 32079331 | 3R | 21878487..21878588 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:16:05 has no hits.
FMO11402.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:57 Download gff for
FMO11402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34148-RB | 99..515 | 9..425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:13 Download gff for
FMO11402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34148-RB | 99..515 | 9..425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:51 Download gff for
FMO11402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34148-RB | 99..515 | 9..425 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:51 Download gff for
FMO11402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21877950..21878077 | 298..425 | 100 | <- | Minus |
| 3R | 21878233..21878419 | 111..297 | 100 | <- | Minus |
| 3R | 21878487..21878588 | 9..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:13 Download gff for
FMO11402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17703672..17703799 | 298..425 | 100 | <- | Minus |
| arm_3R | 17703955..17704141 | 111..297 | 100 | <- | Minus |
| arm_3R | 17704209..17704310 | 9..110 | 100 | | Minus |
