Clone FMO11403 Report

Search the DGRC for FMO11403

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:3
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15528-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11403.5prime Sequence

707 bp (707 high quality bases) assembled on 2011-12-09

> FMO11403.5prime
CAGTCGACATGCAGGAGTTAATAGTCGGCGGCATCGCCATCAGTGGCGTT
CCCTTCGCCAATGAGACGGTCGAGAAGGAAAGTCGCCAGAATCAGCTGAG
TGCATCCACGCTAGAGGATCACACGCCGTTTCCCGGTCTGTCCCGCATCA
CTCCATCGCTGATCCTTTGCGGTGCCGCGGCGGTGGTGCCCGCCTACATG
GACAAACTGGGCGTGAGCTGCGTCATCAACGTGGCGCCCGAGCTGCCGGA
CACACCACTGCCCAGCCAGAAGAACCCGCTCTATCTCCGCATCATGGCCC
AGGATCGCTCCGAGGTGGACTTGGCCAAGCATTTTGACGAGGCGGCCGAT
CTGATCGAGGAGGTGCATCTCTCCGGCGGCTGCACGTTGATCCACTGCGT
GGCCGGCGTCAGCCGCTCGGCCAGCCTGTGCCTGGCCTATCTAATGAAGC
ACGCCGGGATGAGCTTGCGCGAGGCCTACAAGCATGTGCAGGCCATACGT
CCGCAGGTTCGCCCGAACTCCGGATTCTTCCAGCAGCTGCGACGGTACGA
GCAACAGCTGCGGGGCAGCAGCTCGGTGGCCATGGTGTACTTCGCCTCGC
TGGACAAGGAGATCCCCGACATACTGGAGCCCGAGTACAGGGCCATGGAG
GACTTCTACCAGCGCTACCGCAGCTCCCTCAAGAGGCGAGCAAGCTTTCT
AGACCAT

FMO11403.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15528-RB 1032 CG15528-RB 173..855 7..689 3415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30048812..30049409 689..92 2990 100 Minus
3R 32079331 3R 30051856..30051940 91..7 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:16:14 has no hits.

FMO11403.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:57 Download gff for FMO11403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15528-RB 168..860 1..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:17 Download gff for FMO11403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15528-RB 168..860 1..695 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:55 Download gff for FMO11403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15528-RB 168..860 1..695 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:55 Download gff for FMO11403.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30048807..30049409 92..695 99 <- Minus
3R 30051856..30051945 1..91 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:17 Download gff for FMO11403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25874529..25875131 92..695 99 <- Minus
arm_3R 25877578..25877667 1..91 96   Minus