FMO11405.5prime Sequence
1057 bp (986 high quality bases) assembled on 2011-12-09
> FMO11405.5prime
CAGTCGACATGGCGATGCGACACTTGACAGCTGCCACAATGGGCGTATTG
CTGCCAGTGGGCGTGCTGGGATTTGTGGTGCTGATGCAATTGATGGCATC
GGTGCGTGGACATGGTCGACTAATGGATCCACCGGCCAGGAATGCCATGT
GGCGTTTTGGCTATCCCAATCCGGTGAACTACAATGACAATGAGCTCTTC
TGCGGCGGCTATGCGGTGCAATGGGAGCAAAATAAGGGACGTTGCGGTAT
CTGCGGCGATGCCTACCACGTCAAATCGCCCAGGCCGCACGAGGCTGGTG
GTCAATACGCCAAGGGCATCATCTCACGCTACTATACCGCCGGTCAGACG
ATCGATGTTGAGGTGGAACTGACTGCCAATCATTATGGCCGTTTCGAGAT
GTTCCTCTGTCCGAACAACAATCCGCGACAGGAGGCGACACAGCAGTGCT
TCGATCGTTATCCGTTGCTCATTTCGGGCAGTCGAGAGCATCGGTATCTG
ATACCGCGTGATGCGAAAAAGAAGGATATATTCCGATACAAGGTACGTTT
GCCGCCATATGTCACCTGCACACAGTGCGTACTCCAATGGACCTACTATA
CGGCCAATATGTGGGGCACCTGTGCCAATGGCACCGAAGCCGTTGGCTGC
GGCAAGGCAGAGACATTCCGCAATTGTGCGGATGTGGCGATCGTTTCGAA
TACCGGCGGCGGTATTCCACCGCCTTTCGTGAATAACAAATCGCCATACC
TGCTCTATTATCGAGATTATCGTGCTCCGGCGGACAACAACATCTTTCCA
CTTATTGTGCGTGACCAAAAGTGCATTGGCGCCCCAGCATTCCGTGCCTT
GCCGGGCATCGACAACTGGTGCGAGATCAATTTGCCTGCGCTATCCGCCC
AATTGTCCGGAGGACGCCTGCCAATGTCCTCAGGAGTGCGTGCCATTGGC
GAGTATGCTGACAGGATGTGCCGACACCTACTGCATGACAGTGTTCTCAC
TATGAATCCGATGTCCGCCGGACGATGCCGCTGCTACCAAGCTTTTCTTA
GACCATC
FMO11405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42749-RC | 1412 | CG42749-RC | 280..1315 | 8..1037 | 4925 | 98.9 | Plus |
| CG42749-RD | 1488 | CG42749-RD | 356..1391 | 8..1037 | 4925 | 98.9 | Plus |
| CG42749-RB | 1407 | CG42749-RB | 280..1083 | 8..811 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5301464..5302059 | 65..660 | 2980 | 100 | Plus |
| X | 23542271 | X | 5302118..5302271 | 658..811 | 770 | 100 | Plus |
| X | 23542271 | X | 5305878..5305995 | 811..929 | 545 | 99.2 | Plus |
| X | 23542271 | X | 5301347..5301404 | 8..65 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:16:31 has no hits.
FMO11405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:59 Download gff for
FMO11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RC | 244..1290 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:26 Download gff for
FMO11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RD | 348..1394 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:02 Download gff for
FMO11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42749-RD | 348..1394 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:02 Download gff for
FMO11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5301339..5301404 | 1..65 | 95 | -> | Plus |
| X | 5301465..5302059 | 66..660 | 100 | -> | Plus |
| X | 5302121..5302271 | 661..811 | 100 | -> | Plus |
| X | 5305879..5305995 | 812..929 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:26 Download gff for
FMO11405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5195372..5195437 | 1..65 | 95 | -> | Plus |
| arm_X | 5195498..5196092 | 66..660 | 100 | -> | Plus |
| arm_X | 5196154..5196304 | 661..811 | 100 | -> | Plus |
| arm_X | 5199912..5200028 | 812..929 | 99 | -> | Plus |
