FMO11406.5prime Sequence
789 bp (-56 high quality bases) assembled on 2011-12-09
> FMO11406.5prime
AAAAAAAGGTATCTGTCGAATGAAGCGAACTCTCCTGCTTTTGTCTTTAG
TTTTTTGTGGTCTAGCTATTGTGAAGGCATTAGAGTGCCAGGAGTGCCTA
GACTTTAACGATGTGTATTGTGTAGACCAAACTTCCTATAGGAATTGCAT
CAAAAGCAAGCCTTTTGGCAACGTGATAAGCTGCCCCGACGATACGGTTT
GCACAAACTCGAAAAATGTTTGTGTGAAAAGCTCTGATCTAGCAAAATCT
GAAGTCGATGTCTGTGGAACCTCCGGTGGAAACCAATGTGCAACATGCAC
AAATCAGAAATATACTTGTGTTAGCAAAAATCAATTTGCGAGATGTTCCG
AATCGGTTGTGGTCGACTCAAACATCTATGACTGCCATACTGATGATATT
TGCAGTTCGGAAGCACTGGAAAAGTACGACAACATATGTACGCCTTCTTG
TGTCCTCGATTTTCTCGACGTGAGAGCCACTTGCAGCAACAGTGAATACA
CGACAACAACTACCGCAGCACCGATACTGTCACACCCAGTACAGAGCAGA
AAAATAGTGCCTGTACTGAAGCTGAATAAGATCTTCAAATACCTAAAGAA
ACCTTGTACTTCTTGACGATCTACAAGAGGATACTTCCTGCACACTTATC
TCTACTGCGAAAGAACTGAACCCACCGAATGGGGACACTGTTTATTTGTC
CTGCCCCAACCCAACCCATATTTTCGATTCTACGACCAGCCTTTGCGTAT
CGACGAAACCAAGGGGAGCTCCGCAGCTTTCTAGACCAT
FMO11406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33258-RC | 819 | CG33258-RC | 41..797 | 19..772 | 3365 | 96.8 | Plus |
| CG33258-RB | 964 | CG33258-RB | 41..797 | 19..772 | 3365 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16082779..16083089 | 153..463 | 1510 | 99 | Plus |
| 3L | 28110227 | 3L | 16083160..16083465 | 464..767 | 1135 | 95.8 | Plus |
| 3L | 28110227 | 3L | 16082591..16082724 | 19..152 | 565 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:16:40 has no hits.
FMO11406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:59 Download gff for
FMO11406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33258-RB | 36..797 | 14..772 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:30 Download gff for
FMO11406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33258-RB | 36..797 | 14..772 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:05 Download gff for
FMO11406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33258-RB | 36..797 | 14..772 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:05 Download gff for
FMO11406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16082586..16082724 | 14..152 | 92 | -> | Plus |
| 3L | 16082779..16083089 | 153..463 | 99 | -> | Plus |
| 3L | 16083160..16083471 | 464..772 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:30 Download gff for
FMO11406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16075686..16075824 | 14..152 | 92 | -> | Plus |
| arm_3L | 16075879..16076189 | 153..463 | 99 | -> | Plus |
| arm_3L | 16076260..16076571 | 464..772 | 95 | | Plus |
