FMO11411.5prime Sequence
1066 bp (965 high quality bases) assembled on 2011-12-09
> FMO11411.5prime
CAGTCGACATGCTGCCGCCGATGGCTTTTGCCTTACCCACACGTCGTGTT
CCGGTGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCACAAGCCGGC
CAGTGTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGGCTTGGTGA
AGGGAGCCGCCGAGGGTCAGGGACTTGGAAACGACTTCCTTTCGCACATC
AGCGCCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAGGATCCGGA
TGTGACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCTGGAGATCA
TCTCCGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCAAGAACTTG
GACAAACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAGCTCAAGCC
CGAATACGATTCGATGCTTAAGATTAAGGATATCCTTATCGATCAGAATC
GTCATCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGGCCTTGAAC
AAGTATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTGAACCTTTC
GGACAAGGACTTCATCCGCAAGAAGAACAAGTGGCTGCCGAAGATCAAGG
AATGGATCGACAAGAACGATCCCGGAGCACTGCTCATTCCCTTCTCCGGC
GCCTTCGAGCACCAGCTGACCGAAAAAGGACGAACTGGAGCGCAAGGCCT
ACGAGACGGAGACCAAGTGCAAAAGTATGCTGGAGAAGATCGTTGTGACC
GGCTACAAAGGGCCTGCAGCTGGAGTACTTCTTCACCGCCGGGCCGGATG
AAGTGAAGGCATGGACCATCCAGAAGGCACCAAGGCTCCCCAAGGCCGCC
GGACGCATTCACACCGACTCGAGAAGGGCTTCATTATGGCCGAGTGATGC
ACTTCGAGGACTTCAAGGCGGAGGGCAGTGAAGGCGAATGCCAAGCCCGC
TGGCAATATCGCCAACAGGACGCAACCTACACCGGTCGAGGATGGCCGAC
ATCATATTTCTTTAGTTTCAACGCCCGGCGCTGGCCTCAAGGATGCCAGA
GAGCAGCTTCTAGACA
FMO11411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1354-RB | 1257 | CG1354-RB | 21..1056 | 9..1048 | 4740 | 97.8 | Plus |
CG1354-RE | 1491 | CG1354-RE | 286..1287 | 43..1048 | 4570 | 97.7 | Plus |
CG1354-RA | 1498 | CG1354-RA | 296..1297 | 43..1048 | 4570 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9781159..9781717 | 486..1048 | 2055 | 95.8 | Plus |
X | 23542271 | X | 9780509..9780892 | 102..485 | 1875 | 99.2 | Plus |
X | 23542271 | X | 9780207..9780301 | 9..103 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:15:48 has no hits.
FMO11411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:55 Download gff for
FMO11411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RB | 21..1061 | 9..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:06 Download gff for
FMO11411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RB | 21..1061 | 9..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:44 Download gff for
FMO11411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1354-RB | 21..1061 | 9..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:44 Download gff for
FMO11411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9780207..9780301 | 9..103 | 100 | -> | Plus |
X | 9780511..9780892 | 104..485 | 99 | -> | Plus |
X | 9781159..9781722 | 486..1056 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:06 Download gff for
FMO11411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9674240..9674334 | 9..103 | 100 | -> | Plus |
arm_X | 9674544..9674925 | 104..485 | 99 | -> | Plus |
arm_X | 9675192..9675755 | 486..1056 | 96 | | Plus |