Clone FMO11411 Report

Search the DGRC for FMO11411

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:11
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1354-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11411.5prime Sequence

1066 bp (965 high quality bases) assembled on 2011-12-09

> FMO11411.5prime
CAGTCGACATGCTGCCGCCGATGGCTTTTGCCTTACCCACACGTCGTGTT
CCGGTGCCCGATGAGCGTTTCGATTACCTGGTGGAGTACCACAAGCCGGC
CAGTGTGGTTCCTGCCTATTTGAACGTCGTGGACATTGCTGGCTTGGTGA
AGGGAGCCGCCGAGGGTCAGGGACTTGGAAACGACTTCCTTTCGCACATC
AGCGCCTGCGATGCCATTTTCCACTTGTGCCGCGCCTTCGAGGATCCGGA
TGTGACCCACGTGGAGGGCGAGGTGGATCCGGTGCGCGATCTGGAGATCA
TCTCCGAGGAGCTGCGCCTCAAGGACGAGGAGAATCTGCTCAAGAACTTG
GACAAACTGGAGAAGGTGGTGGCCCGCGGCGGCGACAAGAAGCTCAAGCC
CGAATACGATTCGATGCTTAAGATTAAGGATATCCTTATCGATCAGAATC
GTCATCTGCGCTTCGAGGACTGGAATGCCCATGATATTGAGGCCTTGAAC
AAGTATCTGTTCCTGACCTCCAAACCGGTCATCTACCTGGTGAACCTTTC
GGACAAGGACTTCATCCGCAAGAAGAACAAGTGGCTGCCGAAGATCAAGG
AATGGATCGACAAGAACGATCCCGGAGCACTGCTCATTCCCTTCTCCGGC
GCCTTCGAGCACCAGCTGACCGAAAAAGGACGAACTGGAGCGCAAGGCCT
ACGAGACGGAGACCAAGTGCAAAAGTATGCTGGAGAAGATCGTTGTGACC
GGCTACAAAGGGCCTGCAGCTGGAGTACTTCTTCACCGCCGGGCCGGATG
AAGTGAAGGCATGGACCATCCAGAAGGCACCAAGGCTCCCCAAGGCCGCC
GGACGCATTCACACCGACTCGAGAAGGGCTTCATTATGGCCGAGTGATGC
ACTTCGAGGACTTCAAGGCGGAGGGCAGTGAAGGCGAATGCCAAGCCCGC
TGGCAATATCGCCAACAGGACGCAACCTACACCGGTCGAGGATGGCCGAC
ATCATATTTCTTTAGTTTCAACGCCCGGCGCTGGCCTCAAGGATGCCAGA
GAGCAGCTTCTAGACA

FMO11411.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1354-RB 1257 CG1354-RB 21..1056 9..1048 4740 97.8 Plus
CG1354-RE 1491 CG1354-RE 286..1287 43..1048 4570 97.7 Plus
CG1354-RA 1498 CG1354-RA 296..1297 43..1048 4570 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9781159..9781717 486..1048 2055 95.8 Plus
X 23542271 X 9780509..9780892 102..485 1875 99.2 Plus
X 23542271 X 9780207..9780301 9..103 475 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:15:48 has no hits.

FMO11411.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:05:55 Download gff for FMO11411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 21..1061 9..1056 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:06 Download gff for FMO11411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 21..1061 9..1056 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:44 Download gff for FMO11411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1354-RB 21..1061 9..1056 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:44 Download gff for FMO11411.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9780207..9780301 9..103 100 -> Plus
X 9780511..9780892 104..485 99 -> Plus
X 9781159..9781722 486..1056 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:06 Download gff for FMO11411.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9674240..9674334 9..103 100 -> Plus
arm_X 9674544..9674925 104..485 99 -> Plus
arm_X 9675192..9675755 486..1056 96   Plus