FMO11413.5prime Sequence
1132 bp (1024 high quality bases) assembled on 2011-12-09
> FMO11413.5prime
CAGTCGACATGAGGGAAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAAT
CAGATCGGTTCGAAGTTCTGGGAAATCATCTCCGACGAGCACGGCATCGA
TCCCAATGGTTACTACCACGGCGAGTCCGCCCTGCAGCACGAGCGGATCG
ATGTTTACTACAACGAGGCCAGCAGCGGGAAGTACGTGCCGCGAGCGGTG
CTCATCGACCTGGAGCCGGGCACCATGGACTCCGTCCGCCAGTCGCCGGT
GGGCCAGCTTTTCCGGCCAGATAACTTCGTTTACGGACAGTCGGGAGCCG
GCAACAACTGGGCCAAGGGCCATTACACAGAGGGCGCCGAGCTGATCGAT
TCCGTGCTGGAGGTGCTGCGCAAGGAATCCGAGGGCTGCGACTGCCTGCA
GGGCTTCCAGCTGGCTCACTCGCTTGGCGGAGGCACTGGCTCCGGCCTGG
GCACGCTGCTCATCTCGAAGATTCGCGAGGAGTACCCCGACCGCATCATG
AACTCCTTCTCCGTGGTGCCATCGCCCAAGGTATCCGACACTGTCGTGGA
GCCGTACAATGCCACGCTGTCCATCCACCAGCTGGTGGAGAACACCGACG
AGACATTCTGCATTGACAACGAGGCTCTCTACGACATCTGCTTCCGCACG
CTGAAGCTATCGTCGCCCACCTACGGCGATCTGAACCATCTCGTCTCCGT
CACAATGTCCGGAGTGACCACCTGCCTGCGCTTCCCTGGCCAGCTGAACG
CTGATCTTCGCAAGCTGGCGGTGAACATGGTGCCCTTCCCGCGTCTGCAC
TTCTTCATGCCCGGATTCGCTCCGCTGACCGCCAAGGGATCCCAGCAATA
TCGCGCCCTCACGGTGGCCCGAGCTGACCCAGCAATGTTCGATGCCAAAA
ACATGATGACCGCCTGTGATCCCGGCACGGACGCTACCTCACCGTGGCCT
GCATCTTCCGGGACCATGTCATGAAGAGTGGACACGCAGATGTACAACGT
TGCAGAGCAGACCAGCAGCTACCTTGTCGATCGCATTCCCAACACGTCAA
GGTGGCCGTCTGCACATTCCGCCCGTGGCTCAGATGTCGCACACTTCATG
CACCGACCGCATCCAGGAGATCTCTTAAGCCA
FMO11413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub97EF-RB | 1701 | CG4869-RB | 226..1367 | 5..1130 | 5035 | 97.3 | Plus |
| betaTub97EF-RC | 1701 | CG4869-RC | 226..1367 | 5..1130 | 4345 | 93.6 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 112..1185 | 9..1074 | 2230 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19447851..19448748 | 960..64 | 2050 | 82.6 | Minus |
| 2R | 25286936 | 2R | 24311192..24311753 | 400..960 | 1525 | 86 | Plus |
| 3R | 32079331 | 3R | 9409041..9409603 | 960..399 | 1455 | 85.1 | Minus |
| 3R | 32079331 | 3R | 27974107..27974344 | 301..64 | 1190 | 100 | Minus |
| 3R | 32079331 | 3R | 27968927..27969191 | 962..699 | 1180 | 98.9 | Minus |
| 3R | 32079331 | 3R | 27972918..27973151 | 533..300 | 1170 | 100 | Minus |
| 3R | 32079331 | 3R | 27969658..27969829 | 700..529 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 9409659..9410046 | 402..15 | 440 | 74.2 | Minus |
| 2R | 25286936 | 2R | 24310997..24311138 | 261..402 | 395 | 85.2 | Plus |
| 3R | 32079331 | 3R | 27988099..27988159 | 65..5 | 290 | 98.4 | Minus |
| 3R | 32079331 | 3R | 27967485..27967571 | 1063..978 | 215 | 90.9 | Minus |
| 3R | 32079331 | 3R | 27969439..27969535 | 642..546 | 215 | 81.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:17:15 has no hits.
FMO11413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:02 Download gff for
FMO11413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub97EF-RB | 203..1350 | 1..1131 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:46 Download gff for
FMO11413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub97EF-RB | 220..1367 | 1..1131 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:17 Download gff for
FMO11413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub97EF-RB | 220..1367 | 1..1131 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 21:18:17 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 17:46:46 has no hits.
