FMO11415.5prime Sequence
857 bp (-86 high quality bases) assembled on 2011-12-09
> FMO11415.5prime
CAGTCGACATGTACTGGATTTTGCTGTTGACGTCTCTCTTGCCATGGCAT
CCCCATGCAACTGCCCAATTTCTGGAACCCGATTGTGGATATATGTCACC
GGAGGCACTCCAAAATGAGGAGCACCAGGCGCACATATCCGAGAGTCCTT
GGATGGCTTACTTGCACAAATCTGGCGAGCTTGTATGTGGCGGAACTCTC
GTAAATCATCGATTCATCCTGACAGCAGCACATTGCATACGAGAGGATGA
AAACTTGACTGTGCGACTGGGCGAGTTCAACAGCTTAACTAGTATCGACT
GCAACGGCTCCGATTGCCTGCCACCTTCCGAGGATTTTGAAATAGATGTG
GCCTTCAGGCATGGGGGCTATTCCAGAACCAATAGGATCCACGACATTGG
ACTTCTCCGGCTGGCCAAGTCGGTGGAGTATAAAGTTCACATTAAGCCCA
TTTGCCTGATCACAAATACGACCCTTCAGCCGAAGATTGAAAGACTCCAC
AGGCTGGTAGCCACTGGCTGGGGCCGCAGCCCATCGGAAGCTGCAAACCA
CATCCTAAAGTCCATTCGCGTAACCAGAGTGAATTGGGGTGTGTGCAGCA
AAACATACTGGGTTGACCGTCGTAGGGATCAGATCTGCGTGAGTCACGAG
TCCGGAGTGTCGTGCAGCGGGCGACTCCGGCGGACCCATGGGCCAAGCCA
TTCGGCTCGACGGTCGAGTGCTCTTCGTTCAAGTCGGAATCGTTAGCTAT
GGCAACGCTGAGTGCCTCAGTCCCAGTGTTTTCACAAACGTGATGGAACA
TATTGATTGGATATGGCGGCGTTGAGCACAACTCACATTGCAAGCTTTCT
AGACCAT
FMO11415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30286-RB | 904 | CG30286-RB | 12..842 | 9..839 | 4095 | 99.6 | Plus |
| CG30286-RC | 967 | CG30286-RC | 12..438 | 9..435 | 2135 | 100 | Plus |
| CG30286-RC | 967 | CG30286-RC | 500..905 | 434..839 | 1970 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21535778..21536183 | 839..434 | 1920 | 99.3 | Minus |
| 2R | 25286936 | 2R | 21536582..21536784 | 211..9 | 1015 | 100 | Minus |
| 2R | 25286936 | 2R | 21536245..21536423 | 435..257 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 21536481..21536527 | 257..211 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:17:24 has no hits.
FMO11415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:03 Download gff for
FMO11415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30286-RB | 4..847 | 1..844 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:49 Download gff for
FMO11415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30286-RB | 4..847 | 1..844 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:21 Download gff for
FMO11415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30286-RB | 4..847 | 1..844 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:21 Download gff for
FMO11415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21535773..21536181 | 436..844 | 98 | <- | Minus |
| 2R | 21536245..21536423 | 257..435 | 100 | <- | Minus |
| 2R | 21536482..21536527 | 211..256 | 100 | <- | Minus |
| 2R | 21536583..21536788 | 1..210 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:49 Download gff for
FMO11415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17423278..17423686 | 436..844 | 98 | <- | Minus |
| arm_2R | 17423750..17423928 | 257..435 | 100 | <- | Minus |
| arm_2R | 17423987..17424032 | 211..256 | 100 | <- | Minus |
| arm_2R | 17424088..17424293 | 1..210 | 98 | | Minus |
