FMO11416.5prime Sequence
1137 bp (1025 high quality bases) assembled on 2011-12-09
> FMO11416.5prime
CAGTCGACATGATGAACTTCTCCGCGTTCGGCGGCCCCTTCTCCGGCATC
CACCAATTTGCCGCTAAATTCGACGCCCAGACGCCGGGCGCCTTCGGCAC
GCCCCCCGCGGCTGCCGCGAATGCAGCAGCCGCAGCGGCAGCGGCCGGCA
CCGATAACCATGTGCAGCGATATCAGACCAATGGCAATCACTTTAATCAG
AATGTGCCCAACGTTTCGGCTGCCAACAACATGCAATATGGCCAGAATAT
CTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTCAATGCAG
CCGCTGCGGCCGATCATAAGGTCCTCAACCAGCAGATCCTGCAGAATGTC
AACCAATCCTGGCAGACGTTGGCAAATACGGCCAACACGGTGGACTACTC
GTCACACCTGCTCTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCA
AGTACTCGGAGACGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAAC
GGCACCAATTTGGCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAG
CAACAACGGTGCGAATGGCGGCCACCACAACGGACTGGTGGGCATGGACC
ATGGCGGTCACATGACCAACATGACGGACGCCAACGGAGCGGCGCTGACG
AACGGAGCTAGCAACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAA
TGGTGGCGCCGGCGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACG
CCAGCGGCGGCACAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAA
CCACCAAAGGAGAAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGAC
AAAGGCGCTGGATGGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGG
CCTACCCGGATCGCAGCCTCATCGAGCAGCACGTCATCTCGCACGCCGTT
GAGCGGCGCTTCGTCTGCGACATCTGCTATGCGGCGCTGAAGCGCAGGAC
TACTTGACCAGGCACAAGCTCCTCCCACATACCGGACAGCCGCTTGTGTG
CCAATAATCTGCTTGAAATCTTTCAAGCGCAAGGACAGCCTCACCCTGAC
CATGCTATTCCATCCGGCTAGAAAAACATGTTTGCCA
FMO11416.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RD | 4963 | CG6930-RD | 1212..2342 | 6..1135 | 5210 | 97.8 | Plus |
| l(3)neo38-RJ | 3691 | CG6930-RJ | 148..1070 | 214..1135 | 4170 | 97.3 | Plus |
| l(3)neo38-RG | 3815 | CG6930-RG | 272..1194 | 214..1135 | 4170 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11769386..11770104 | 1039..321 | 3455 | 99.3 | Minus |
| 3R | 32079331 | 3R | 11777474..11777681 | 213..6 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 11771193..11771301 | 321..213 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:17:36 has no hits.
FMO11416.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:03 Download gff for
FMO11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RD | 1185..2284 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:55 Download gff for
FMO11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RD | 1209..2308 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:26 Download gff for
FMO11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RD | 1209..2308 | 1..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:26 Download gff for
FMO11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11769366..11770103 | 322..1056 | 98 | <- | Minus |
| 3R | 11771193..11771300 | 214..321 | 100 | <- | Minus |
| 3R | 11777474..11777683 | 1..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:55 Download gff for
FMO11416.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7595088..7595825 | 322..1056 | 98 | <- | Minus |
| arm_3R | 7596915..7597022 | 214..321 | 100 | <- | Minus |
| arm_3R | 7603196..7603405 | 1..213 | 98 | | Minus |
