Clone FMO11418 Report

Search the DGRC for FMO11418

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:114
Well:18
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42692-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO11418.5prime Sequence

470 bp (470 high quality bases) assembled on 2011-12-09

> FMO11418.5prime
CAGTCGACATGAATAAAGAAGCAACGAAAAGGCGGCGCCAGAGGTGCACC
GAATCACTCAAGGATATATTGTCAAATCTGCGCATTCGTAACAAAAAGGC
CTGGTTCAATTATGTAGACAAGACTAAATCGCCACATATAAGAAATTTGT
TGGCCAAAGAATCGTATAAAAAATTAAAAAATGCTTCCAAAACTTCAGGT
AAGGAAAAAAGAAAGATTGAAAAATTGCAACGTTCTTTAAAAAAAATGAT
GAAGCAAGAGTTACAAAAACAGGTGATTTACCTAAAGAATATTTGGGTGT
CCTTAGCACATGTCCTTGCACTACTTTTCGATCAAGGACCTATTGAGCAA
ATCAGCAGCCTGGTATTCACTATATTCACTATAACTAAATCTTTGGTAGT
TGGCATTAAGTATAAAACCAAAATGGAAGATTTCGCCGAGCATCACAGCG
AAGCAAGCTTTCTAGACCAT

FMO11418.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG42692-RB 642 CG42692-RB 89..532 9..452 2205 99.8 Plus
CG42692-RA 603 CG42692-RA 277..472 257..452 980 100 Plus
CG42692-RA 603 CG42692-RA 89..278 9..198 935 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14008364..14008689 127..452 1630 100 Plus
2L 23513712 2L 14008189..14008306 9..126 575 99.2 Plus
Blast to na_te.dros performed 2014-11-27 20:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT5 669 Dbuz\BuT5 BUT5 669bp 493..557 200..135 111 65.2 Minus

FMO11418.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:05 Download gff for FMO11418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42692-RB 58..519 1..463 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:02 Download gff for FMO11418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42692-RB 84..545 1..463 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:33 Download gff for FMO11418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42692-RB 84..545 1..463 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:33 Download gff for FMO11418.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14008184..14008306 1..126 96 -> Plus
2L 14008364..14008702 127..463 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:02 Download gff for FMO11418.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14008364..14008702 127..463 98   Plus
arm_2L 14008184..14008306 1..126 96 -> Plus