FMO11423.5prime Sequence
1004 bp (1004 high quality bases) assembled on 2011-12-09
> FMO11423.5prime
CAGTCGACATGGAAAATTCTGCGCGAATCGTATATGTGTGCAGTCTCTGC
CTTCGTCAATATGATCTCCAGGAGGATCTTCGAGGACATCTCGTCTACTT
TCACGGCTATGAGCCCATCTCAACGCCCAGTGTCAAAAACAAAACTGCGA
AGACTTCAACTAAGGAACAAACTGCAGCCGGCAGCAACAGCCAGGATAAG
CAAACCGTTGTGGAGCGATCGGAGAACTCGGAACCCCCGGCAAGTGAACT
GCAGCCCATGCCTTTCAAGGACTTTCGGCTGGTGCTAAGGGCCAACATGT
TAGAGCCGTGCTCCTTTGGAAAGGAATGCCCCTTCAAGTTCCAAGATGCT
ACCAAAATGGAGCTCCACTGTAGTTGCCATAAGGGTGGCAGTTTTTCCTG
CTGCGAATGTGGCATGGAACTGCCCAACTGGCGGCGGTGCTCGGCTCACC
TGTGGAAAGCCCACCAGGTGGATGTGGACCTACTAGTGTGTCCCGTTTTC
GAATGCAACTACAAGTCGCCCATATCCGCTCTCGTGTGGCGCCACATGCA
GGTTCACAAAAAGTGGCGACCCAGGGTGCTCCGGTCACTGGCTGCCGTTC
AGCGGAGAAGAAAGCTCAAAGGAACAGTCCGCAGAGATGGCCGCGCAACC
TGCTGCTCTGCCACCATCGTCAAAGAAAAACAAATACTATGCCGAGAAGA
CTTGCGAGATTTGCAATCGCAAGTTTGTCAACGGTAAAACGCTCTCTAAA
CACGTGAAGACTGTTCACAACAAAATCAAGCCATTTATCTGCAATGTGTG
TGGCAAAAAGACGGCTCGCAAGGCTAGCTTAATAGTGAGTTCAGATAGCA
CTTTACGATCTTCTTGCTACCTAATACTCTTTCCAGATTCACATGCGTCA
GCACACGGGGCGAGAAGCCGCTGCAATGTGCGAATGCAAGTTCTCCCACT
CGCGATCCCAGTGTCCTGCACAAGCATCGGCAGCGTCAGCAGGCTTTCTA
GACA
FMO11423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11456-RB | 1806 | CG11456-RB | 65..1042 | 9..988 | 4805 | 99.6 | Plus |
| CG11456-RC | 1433 | CG11456-RC | 65..889 | 9..834 | 4105 | 99.9 | Plus |
| CG11456-RA | 1754 | CG11456-RA | 65..889 | 9..834 | 4105 | 99.9 | Plus |
| CG11456-RC | 1433 | CG11456-RC | 890..990 | 887..988 | 440 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20842403..20843081 | 308..988 | 3210 | 99.4 | Plus |
| 3L | 28110227 | 3L | 20842051..20842351 | 9..309 | 1505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:16:57 has no hits.
FMO11423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:01 Download gff for
FMO11423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11456-RB | 51..1028 | 9..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:39 Download gff for
FMO11423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11456-RB | 65..1042 | 9..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:10 Download gff for
FMO11423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11456-RB | 65..1042 | 9..988 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:10 Download gff for
FMO11423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20842051..20842349 | 9..307 | 100 | -> | Plus |
| 3L | 20842403..20843081 | 308..988 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:39 Download gff for
FMO11423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20835151..20835449 | 9..307 | 100 | -> | Plus |
| arm_3L | 20835503..20836181 | 308..988 | 99 | | Plus |
