FMO11424.5prime Sequence
1141 bp (1010 high quality bases) assembled on 2011-12-09
> FMO11424.5prime
CAGTCGACATGAGGCTGACGAACACTCTCTGTGCCCAGCACATCGGCTGG
CATTTCAAGAAGCACTGGCTGGTCCAGGGTAGGCGAGTCCCCAAGGAAAC
TGGCGCCGCGGCGGAGCTCCTGAAGCTAGGTGTTCTGGTGAAGAATCCCG
AGGATCTCTTGAACGCCAAAGTTGAAAAAAAACTAGTGGACATTGTTGGC
GCACGCGAAAAACCCGTTCCCGAGGACAGCAGGCACCCTGACTGGCACCC
CACAGTTTGCAACACTTACTCCGACAACAGCGTGCTAATTGGTGGATTGC
CGCAGGCCCAGGTGCTGACCAACTCCATTGTGATCCAAACATTTCCCAAG
CACATCGAGGATGCCATTGCAAGTCAGCAGTTGCCAAATTCCGTAGACAA
GAGTGTCCGGCATGCGATTCTGGCATCCCACGTGCTTGATGCAGAGCAAG
TCAAGCTGCCCAAGGTGAGGCTACCGGAGAGGCCGGCCTTTAACCTGCCC
CGCTCCTACGGAATATCACACGAAAGGGTCAACCGACTGTTGGTAAACAA
ACTCCTGCATGAAAGTGAAAAACTGGCTGGCCGTTCAGTCTCTGTTCGAA
GGAAGCTGATAGACAACGCGTCTTTTAAGACTTTTTTAAGCAAAGACGGG
GATCTGCTAGGATTCTCAATCAATGCTGAAAAAGTGGTATTTGCCAACCG
AGCCATCGAAGGTGTTAAGGGAAAATTCGAAGGAGATCTGCCTGATCTTT
ACCCCATGAAGAGTACTATATCGATTCCGAAGTACCACATTTACCAAGCT
AAGAACTTGTATCCTTTGCGCTCGGACATCACCTGCTCCCACCCGCACAC
CATCTTTACGGTGTTTAACAAACACCAAGTCAAAAACTCTCACGGATCCG
AGGTCCCAACTTCTCAGCTTCAGGCGAGGACACTGGTCAAAGCTTTCGTT
GTGGCCAGCCGCTCGAGCAAAGCAACTGCATGGGGATTCCGTAGAGCTCT
TCCCAACCAATTGTTGTTGCAAGCCGTCCAGACTGACGTAGACGTTCCAC
TTTCGGGAGTGTTTGCACCTGAATACCCTCCGATTGTGGTTGCCAATAGC
CCTGCCAAGAACTTATTTGGGTTCCATAGGCCAAAACTTAC
FMO11424.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL37-RB | 1356 | CG42632-RB | 84..1206 | 9..1138 | 5170 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10783424..10783771 | 532..185 | 1740 | 100 | Minus |
| 3R | 32079331 | 3R | 10783086..10783370 | 813..529 | 1410 | 99.6 | Minus |
| 3R | 32079331 | 3R | 10783834..10784009 | 184..9 | 880 | 100 | Minus |
| 3R | 32079331 | 3R | 10782806..10783030 | 1038..814 | 860 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:17:07 has no hits.
FMO11424.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:01 Download gff for
FMO11424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL37-RB | 64..1188 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:42 Download gff for
FMO11424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL37-RB | 84..1208 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:13 Download gff for
FMO11424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL37-RB | 84..1208 | 9..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:13 Download gff for
FMO11424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10782711..10783030 | 814..1141 | 92 | <- | Minus |
| 3R | 10783086..10783366 | 533..813 | 100 | <- | Minus |
| 3R | 10783424..10783771 | 185..532 | 100 | <- | Minus |
| 3R | 10783834..10784009 | 9..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:42 Download gff for
FMO11424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6608433..6608752 | 814..1141 | 92 | <- | Minus |
| arm_3R | 6608808..6609088 | 533..813 | 100 | <- | Minus |
| arm_3R | 6609146..6609493 | 185..532 | 100 | <- | Minus |
| arm_3R | 6609556..6609731 | 9..184 | 100 | | Minus |
