FMO11425.5prime Sequence
1112 bp (1022 high quality bases) assembled on 2011-12-09
> FMO11425.5prime
CAGTCGACATGTTGAACTCCCTTCCTTGCTCACTTCTTGATCACCCCAAG
CTAAAATACGTGTTCCTAAAGCGGGTTAAGCCAAAGAAGCACCATGAAAT
CATTCGAATGGCCGAAATCTGTGCCCTGAGTCAACAAAAAACTCCTGTGG
ACTTTATTGTCGACTTTGGGGCTGGTGTCGGTCACCTAGCACGTGTTTTG
GGCTACGGGTATGGACTACGAGTGTGCTGCTATGAGATGCAACCCGATCT
CAATCAGCAAGCAAGGGAAATTGATTTAAAGCTGGAGTCCATGGCAGCAA
AACACCTATCAGAGGATGAAACCACACACTTTCAGCGACCAGTACACCTT
ACACATCGCTTGGAGAGCAGCACTAAGCCAGAGCAGTTCCTATCCAGCAT
TCGGCAGGCCCTGCAGCTAACAGACGACAATTTCCGATTTGGTGTGATAG
GCCTGCATCCCTGTGGCAATCTGGGCCCGACACTGATGCGCATGTTTCTC
GGCTGCCCGCAGGCCAAGTTCCTCAATTTTGTGGGCTGTTGCTACCAGAA
GATGACTACCCAGTCCACCCATCCCAGGGAGCATGTCCATGGGTACCCGT
TGAGCAGTGAACTCAAAGATAAAAACGAATGCCAACTCAGCTACGAGGCC
CGTGAGATCTCCTGTCACGCTATGGAGGTGTATCACGATCGTCTGAGGAT
GGGGGATTACCAACATCTCCGCATACACTCCCTAAGAGCCGCCGCCGAGC
GAATAATAGTGCATCAGTTTCCAGAGCTTCGCCACTGTGCCCTGCGAAAT
GTAAAGTACTCACCCGGCATGACGTTTCACCAATATTTCCAGAAAGCCGT
ACAGGGTACTCGCTTTGAAGCACTGGACAGCCGAACTCTAAGTAACCAGC
AGACGGAAACAGATTTGGCCAACTGGCAACGGATAGTCTCATTCTACACA
CTTCGATTATGATGGCTCCCGCTGGTGGAGAGCATTATTCTTTACGATCG
CTGCTGTTTCTATGAAAATGAATTGTCAAGTAAGAATGAGGCATATTCGA
TCCTCGCTCTGGCTGACCAATCACCAAGGTCGGTAACGCCAGCTTCCAGA
CATTCGTTTGGG
FMO11425.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2906-RE | 1591 | CG2906-RE | 340..1391 | 9..1056 | 5040 | 99.1 | Plus |
| CG2906-RD | 1587 | CG2906-RD | 342..1387 | 15..1056 | 5010 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7956897..7957715 | 14..832 | 4095 | 100 | Plus |
| 2R | 25286936 | 2R | 7957769..7957940 | 833..1004 | 765 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:18:57 has no hits.
FMO11425.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:09 Download gff for
FMO11425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2906-RE | 340..1399 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:28 Download gff for
FMO11425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2906-RE | 340..1399 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:54 Download gff for
FMO11425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2906-RE | 340..1399 | 9..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:54 Download gff for
FMO11425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7956890..7957715 | 4..832 | 99 | -> | Plus |
| 2R | 7957769..7957959 | 833..1021 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:28 Download gff for
FMO11425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3844395..3845220 | 4..832 | 99 | -> | Plus |
| arm_2R | 3845274..3845464 | 833..1021 | 96 | -> | Plus |
