FMO11427.5prime Sequence
878 bp (878 high quality bases) assembled on 2011-12-09
> FMO11427.5prime
CAGTCGACATGGGCGAGCGGGATCAGCCACAGAGCTCAGAGCGGATCTCA
ATATTTAATCCGCCAGTATACACGCAGCACCAGGTGCGCAATGAAGCCCC
CTACATACCCACCACATTTGACCTCCTCTCAGACGATGAGGAGTCGTCAC
AGAGAGTTGCCAACGCCGGGCCATCTTTCAGGCCCTTGACTTACTCGGAT
GCTGTGCGTCTAAGCCAGAATGGCTTCGCCAACTCCCGCGTAAGTGGGCA
CTCCAGCTATACGGTGCGCAGACCACCGGCACTAGTTGACAGAAGCATTC
TATCCCAGGAAATGGAGCGCATGGACCAAGAGCAGTATATCTACCTTATC
CGTACCGCAGCCCAAAGTAATTCCGTGGGCAGTCACTACGCCGAACCGGT
TACTGATAACTCGGAGGTCAAGAAAGTCAGTGAAACCAACAAAAGTGACG
CACCACAGCCGTTAACCCCTCAACCTACCAGACTCACCAGAACAGAATCC
TTGCACCGTCGTTTTGCCAGCTGCGTCAACTTAAATGATGACTTCGCCGA
GCAATTTAAAGCAAGAGCGGCGGACTGTGAAGAGAAATCCAAACATCGTC
TTAGATTAGCTGAAGAGCAGAGGCTTTTTTCGAATTTCAGTGCTATAAAG
AACATAGATGAACTCCGTGCCTATGAACGAAAAGTAGTGGAAAACATATT
CCAGTCTTGTATCGCCCACAAGCCCATTTTTGTACTCGGGCCCTTGGACA
AGCCAAATGTGAAGAAAGTGACCAAGCTCATTCCGTTAACAGAGGAGCAC
CACGATCGCTTTAACGAAAATTACACAGGATGATAAATCGACGGTATGGC
AACGAATATATGCAGCTTTCTAGACCAT
FMO11427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11023-RB | 1880 | CG11023-RB | 151..1003 | 8..861 | 4245 | 99.9 | Plus |
| CG11023-RC | 1802 | CG11023-RC | 151..986 | 8..844 | 4160 | 99.9 | Plus |
| CG11023-RD | 1844 | CG11023-RD | 151..588 | 8..445 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7679..8116 | 8..445 | 2190 | 100 | Plus |
| 2L | 23513712 | 2L | 8191..8607 | 444..861 | 2040 | 99.8 | Plus |
| X | 23542271 | X | 19204495..19204830 | 356..9 | 760 | 81.9 | Minus |
| X | 23542271 | X | 19203589..19203789 | 819..619 | 315 | 77.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:19:15 has no hits.
FMO11427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-09 10:06:10 Download gff for
FMO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11023-RB | 146..1014 | 1..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:47:35 Download gff for
FMO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11023-RB | 146..1014 | 1..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:59 Download gff for
FMO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11023-RB | 146..1014 | 1..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:59 Download gff for
FMO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7674..8116 | 1..445 | 99 | -> | Plus |
| 2L | 8193..8618 | 446..870 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:47:35 Download gff for
FMO11427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7674..8116 | 1..445 | 99 | -> | Plus |
| arm_2L | 8193..8618 | 446..870 | 98 | | Plus |
